Build: modify list of models to run with estimation

Addresses: nmfs-ost/ss3-test-models#11
nmfs-ost · Sep 16, 2021 · 9746cbf · 9746cbf
1 parent 3637910
commit 9746cbf
Showing 1 changed file with 15 additions and 8 deletions.
diff --git a/.github/workflows/run-with-est.yml b/.github/workflows/run-with-est.yml
@@ -50,14 +50,21 @@ jobs:
   
       - name: keep only fast running models
         run: |
-          # comment out some temporarily for testing.
-          keep_mods <- c("growth_timevary", "Hake_2018", "growth_morphs", "Hake_2019_semi-parametric_selex", 
-            "Empirical_Wtatage_Age_Selex", "Simple_NoCPUE", "Simple", "Simple_with_Discard",
-            "tagging_mirrored_sel", "three_area_nomove", "vermillion_snapper", "three_area",
-            "KelpGreenling2015", "BigSkate_2019")
-            message("Models to keep are ", paste0(keep_mods, collapse = ", " ))
-          all_mods <- list.dirs(file.path("ss-test-models-repo", "model_runs"), full.names = FALSE, recursive = FALSE)
-          rm_mods <- all_mods[!all_mods %in% keep_mods]
+          #keep_mods <- c("growth_timevary", "Hake_2018", "growth_morphs", "Hake_2019_semi-parametric_selex", 
+          #  "Empirical_Wtatage_Age_Selex", "Simple_NoCPUE", "Simple", "Simple_with_Discard",
+          #  "tagging_mirrored_sel", "three_area_nomove", "vermillion_snapper", "three_area",
+          #  "KelpGreenling2015", "BigSkate_2019")
+          # remove these models because they take too long to run
+          rm_mods <- c("BlueDeaconRF_2017", "BlackRf_2015_WA", "China_2015_Central",
+                     "Spinydogfish_2011", "YellowtailRF_2017", "Bocaccio_2015",
+                     "Darkblotched_2015", "POP_2017", "seasonal_with_size_comp",
+                     "Widow_2015", "YelloweyeRF_2017", "CanaryRf_2015",
+                     "Petrale2015", "three_area_double_normal_selex",
+                     "Sablefish2015")
+          all_mods <- list.dirs(file.path("ss-test-models-repo", "model_runs"),
+            full.names = FALSE, recursive = FALSE)
+          keep_mods <- all_mods[!all_mods %in% rm_mods]
+          message("Models to keep are ", paste0(keep_mods, collapse = ", " ))
           # remove files for models that are not in keep_mods
           for (i in rm_mods) {
             tmp_rm_files <- list.files(file.path("ss-test-models-repo", "model_runs", i), full.names = TRUE)