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feat(workspaces): --include-workspace-root
Adds a new config item that includes the workspace root when running non-arborist commands (i.e. repo, version, publish). Arborist will need to be udpated to look for this flag to change its behavior to include the workspace root for its functions. This also changes --workspaces to a trinary, so that setting it to false will explicitly exclude workspaces altogether. This is also going to require an arborist change so that it ignores workspaces altogether.
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