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[NSE-265] Reserve enough memory before UnsafeAppend in builder #266

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merged 2 commits into from
Apr 23, 2021

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@JkSelf JkSelf commented Apr 21, 2021

What changes were proposed in this pull request?

Related to #265

fixes: #241

shuffle builder use UnsafeAppend API for better performance. it
tries to reserve enough space based on results of last recordbatch,
this maybe not buggy if there's a dense recordbatch after a sparse one.

this patch adds below fixes:

  • adds Reset() after Finish() in builder
  • reserve length for offset_builder in binary builder

A further clean up on the reservation logic should be needed.

How was this patch tested?

locally verified

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#265

@JkSelf
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JkSelf commented Apr 21, 2021

@zhouyuan You can have a try with this PR.

@zhouyuan
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@JkSelf
thanks a lot for digging into this bug! this seems to be one hidden bug from codes committed while ago
I made some quick tests on my env, it looks like we are missing one call to reserve size in the offsets_builder_. below patch can make it work also. we may need to check Reserve() the right size in somewhere.

diff --git a/native-sql-engine/cpp/src/shuffle/splitter.cc b/native-sql-engine/cpp/src/shuffle/splitter.cc
index 2eebb9ae..31856e36 100644
--- a/native-sql-engine/cpp/src/shuffle/splitter.cc
+++ b/native-sql-engine/cpp/src/shuffle/splitter.cc
@@ -1047,6 +1047,7 @@ arrow::Status Splitter::AppendBinary(
       offset_type length;
       auto value = src_arr->GetValue(row, &length);
       const auto& builder = dst_builders[partition_id_[row]];
+      RETURN_NOT_OK(builder->Reserve(1));
       RETURN_NOT_OK(builder->ReserveData(length));
       builder->UnsafeAppend(value, length);
     }
@@ -1056,6 +1057,7 @@ arrow::Status Splitter::AppendBinary(
         offset_type length;
         auto value = src_arr->GetValue(row, &length);
         const auto& builder = dst_builders[partition_id_[row]];
+        RETURN_NOT_OK(builder->Reserve(1));
         RETURN_NOT_OK(builder->ReserveData(length));
         builder->UnsafeAppend(value, length);
       } else {

@rui-mo
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rui-mo commented Apr 22, 2021

verified q67 on my env.

@zhouyuan zhouyuan changed the title [NSE-265] Change the UnsafeAppend to Append to fix the memmove exception [NSE-265] Reserve enough memory before UnsafeAppend in builder Apr 23, 2021
shuffle builder use UnsafeAppend API for better performance. it
tries to reserve enough space based on results of last recordbatch,
this maybe not buggy if there's a dense recordbatch after a sparse one.

this patch adds below fixes:
- adds Reset() after Finish() in builder
- reserve length for offset_builder in binary builder

A further clean up on the reservation logic should be needed.

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>
@zhouyuan zhouyuan force-pushed the fixMemmoveException branch 2 times, most recently from 242fe7a to c4074b5 Compare April 23, 2021 04:10
@zhouyuan zhouyuan merged commit 94af4ac into oap-project:master Apr 23, 2021
zhouyuan added a commit to zhouyuan/native-sql-engine that referenced this pull request Apr 23, 2021
…roject#266)

* change the UnsafeAppend to Append

* fix buffer builder in shuffle

shuffle builder use UnsafeAppend API for better performance. it
tries to reserve enough space based on results of last recordbatch,
this maybe not buggy if there's a dense recordbatch after a sparse one.

this patch adds below fixes:
- adds Reset() after Finish() in builder
- reserve length for offset_builder in binary builder

A further clean up on the reservation logic should be needed.

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

Co-authored-by: Yuan Zhou <yuan.zhou@intel.com>
zhouyuan added a commit that referenced this pull request Apr 23, 2021
* [NSE-262] fix remainer loss in decimal divide (#263)

* fix decimal divide int issue

* correct cpp uts

* use const reference

Co-authored-by: Yuan <yuan.zhou@outlook.com>

Co-authored-by: Yuan <yuan.zhou@outlook.com>

* [NSE-265] Reserve enough memory before UnsafeAppend in builder (#266)

* change the UnsafeAppend to Append

* fix buffer builder in shuffle

shuffle builder use UnsafeAppend API for better performance. it
tries to reserve enough space based on results of last recordbatch,
this maybe not buggy if there's a dense recordbatch after a sparse one.

this patch adds below fixes:
- adds Reset() after Finish() in builder
- reserve length for offset_builder in binary builder

A further clean up on the reservation logic should be needed.

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

Co-authored-by: Yuan Zhou <yuan.zhou@intel.com>

Co-authored-by: Rui Mo <rui.mo@intel.com>
Co-authored-by: JiaKe <ke.a.jia@intel.com>
zhouyuan added a commit that referenced this pull request May 13, 2021
* [NSE-262] fix remainer loss in decimal divide (#263)

* fix decimal divide int issue

* correct cpp uts

* use const reference

Co-authored-by: Yuan <yuan.zhou@outlook.com>

Co-authored-by: Yuan <yuan.zhou@outlook.com>

* [NSE-261] ArrowDataSource: Add S3 Support (#270)

Closes #261

* [NSE-196] clean up configs in unit tests (#271)

* remove testing config

* remove unused configs

* [NSE-265] Reserve enough memory before UnsafeAppend in builder (#266)

* change the UnsafeAppend to Append

* fix buffer builder in shuffle

shuffle builder use UnsafeAppend API for better performance. it
tries to reserve enough space based on results of last recordbatch,
this maybe not buggy if there's a dense recordbatch after a sparse one.

this patch adds below fixes:
- adds Reset() after Finish() in builder
- reserve length for offset_builder in binary builder

A further clean up on the reservation logic should be needed.

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

Co-authored-by: Yuan Zhou <yuan.zhou@intel.com>

* [NSE-274] Comment to trigger tpc-h RAM test (#275)

Closes #274

* bump cmake to 3.16 (#281)

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* [NSE-276] Add option to switch Hadoop version (#277)

Closes #276

* [NSE-119] clean up on comments (#288)

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* [NSE-206]Update installation guide and configuration guide. (#289)

* [NSE-206]Update installation guide and configuration guide.

* Fix numaBinding setting issue. & Update description for protobuf

* [NSE-206]Fix Prerequisite and Arrow Installation Steps. (#290)

* [NSE-245]Adding columnar RDD cache support (#246)

* Adding columnar RDD cache support

Signed-off-by: Chendi Xue <chendi.xue@intel.com>

* Directly save reference, only convert to Array[Byte] when calling by BlockManager

Signed-off-by: Chendi Xue <chendi.xue@intel.com>

* Add DeAllocator to construction to make sure this instance will be released once it be deleted by JVM

Signed-off-by: Chendi Xue <chendi.xue@intel.com>

* Delete cache by adding a release in InMemoryRelation

Since unpersist only delete RDD object, seems our deAllocator wasn't being called along
Now we added a release function in InMemoryRelation clearCache() func, may need to think
a new way for 3.1.0

Signed-off-by: Chendi Xue <chendi.xue@intel.com>

* [NSE-207] fix issues found from aggregate unit tests (#233)

* fix incorrect input in Expand

* fix empty input for aggregate

* fix only result expressions

* fix empty aggregate expressions

* fix res attr not found issue

* refine

* fix count distinct with null

* fix groupby of NaN, -0.0 and 0.0

* fix count on mutiple cols with null in WSCG

* format code

* support normalize NaN and 0.0

* revert and update

* support normalize function in WSCG

* [NSE-206]Update documents and License for 1.1.0 (#292)

* [NSE-206]Update documents and remove duplicate parts

* Modify documents by comments

* [NSE-293] fix unsafemap with key = '0' (#294)

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* [NSE-257] fix multiple slf4j bindings (#291)

* [NSE-297] Disable incremental compiler in GHA CI (#298)

Closes #297

* [NSE-285] ColumnarWindow: Support Date input in MAX/MIN (#286)

Closes #285

* [NSE-304] Upgrade to Arrow 4.0.0: Change basic GHA TPC-H test target OAP Arrow branch (#306)

* [NSE-302] remove exception (#303)

* [NSE-273] support spark311 (#272)

* support spark 3.0.2

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* update to use spark 302 in unit tests

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* support spark 311

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* fix

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* fix missing dep

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* fix broadcastexchange metrics

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* fix arrow data source

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* fix sum with decimal

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* fix c++ code

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* adding partial sum decimal sum

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* fix hashagg in wscg

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* fix partial sum with number type

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* fix AQE shuffle copy

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* fix shuffle redudant reat

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* fix rebase

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* fix format

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* avoid unecessary fallbacks

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* on-demand scala unit tests

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* clean up

Signed-off-by: Yuan Zhou <yuan.zhou@intel.com>

* [NSE-311] Build reports errors (#312)

Closes #311

* [NSE-257] fix the dependency issue on v2

Co-authored-by: Rui Mo <rui.mo@intel.com>
Co-authored-by: Hongze Zhang <hongze.zhang@intel.com>
Co-authored-by: JiaKe <ke.a.jia@intel.com>
Co-authored-by: Wei-Ting Chen <weiting.chen@intel.com>
Co-authored-by: Chendi.Xue <chendi.xue@intel.com>
Co-authored-by: Hong <hong2.wang@intel.com>
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TPC-DS q67 failed for XXH3_hashLong_64b_withSecret.constprop.0+0x180
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