add def to extends_fibers_into

Fixes #2677

src/ontology/imports/ro_import.owl

@@ -1257,6 +1257,16 @@ WHERE {
 
 
 
+    <!-- http://purl.obolibrary.org/obo/RO_0002006 -->
+
+    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002006">
+        <rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002131"/>
+        <owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002130"/>
+        <rdfs:label xml:lang="en">has synaptic terminal of</rdfs:label>
+    </owl:ObjectProperty>
+
+
+
     <!-- http://purl.obolibrary.org/obo/RO_0002007 -->
 
     <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002007">
@@ -1458,6 +1468,37 @@ boundary_of: http://purl.obolibrary.org/obo/RO_0002000</obo:IAO_0000115>
 
 
 
+    <!-- http://purl.obolibrary.org/obo/RO_0002100 -->
+
+    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002100">
+        <rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002131"/>
+        <rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/CL_0000540"/>
+        <rdfs:range rdf:resource="http://purl.obolibrary.org/obo/CARO_0000003"/>
+        <owl:propertyChainAxiom rdf:parseType="Collection">
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002100"/>
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
+        </owl:propertyChainAxiom>
+        <obo:IAO_0000115 xml:lang="en">Relation between a neuron and an anatomical structure that its soma is part of.</obo:IAO_0000115>
+        <rdfs:label xml:lang="en">has soma location</rdfs:label>
+    </owl:ObjectProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/RO_0002130 -->
+
+    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002130">
+        <rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002131"/>
+        <rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/CL_0000540"/>
+        <owl:propertyChainAxiom rdf:parseType="Collection">
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002130"/>
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
+        </owl:propertyChainAxiom>
+        <obo:IAO_0000115>A general relation between a neuron and some structure in which it either chemically synapses to some target or in which it receives (chemical) synaptic input.</obo:IAO_0000115>
+        <rdfs:label xml:lang="en">has synaptic terminal in</rdfs:label>
+    </owl:ObjectProperty>
+
+
+
     <!-- http://purl.obolibrary.org/obo/RO_0002131 -->
 
     <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002131">
@@ -3576,6 +3617,20 @@ For example, A and B may be gene products and binding of B by A positively regul
 
 
 
+    <!-- http://purl.obolibrary.org/obo/RO_0013001 -->
+
+    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0013001">
+        <rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002130"/>
+        <owl:propertyChainAxiom rdf:parseType="Collection">
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0013001"/>
+            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
+        </owl:propertyChainAxiom>
+        <obo:IAO_0000115>A relationship between a neuron and a region, where the neuron has a functionally relevant number of input and/or output synapses in that region.</obo:IAO_0000115>
+        <rdfs:label xml:lang="en">has synaptic IO in region</rdfs:label>
+    </owl:ObjectProperty>
+
+
+
     <!-- http://purl.obolibrary.org/obo/RO_0017001 -->
 
     <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0017001">
@@ -3762,6 +3817,12 @@ For example, A and B may be gene products and binding of B by A positively regul
 
 
 
+    <!-- http://purl.obolibrary.org/obo/CL_0000540 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0000540"/>
+
+
+
     <!-- http://purl.obolibrary.org/obo/ENVO_01000254 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_01000254"/>

src/ontology/imports/ro_terms.txt

@@ -7,4 +7,5 @@ RO:0002478
 RO:0002161
 RO:0002171
 RO:0002175
-
+RO:0002100
+RO:0013001

src/ontology/uberon-edit.obo

@@ -147223,8 +147223,8 @@ id: UBERON:0011390
 name: pudendal nerve
 def: "The pudendal nerve is a somatic nerve in the pelvic region that innervates the external genitalia of both sexes, as well as sphincters for the bladder and the rectum. It originates in Onuf's nucleus in the sacral region of the spinal cord." [Wikipedia:Pudendal_nerve]
 synonym: "internal pudendal nerve" RELATED [Wikipedia:Pudendal_nerve]
-synonym: "nervus pudendae" EXACT LATIN [doi:10.1002/ca.23705]
 synonym: "nervus pudendae" EXACT DEPRECATED [doi:10.1002/ca.23705]
+synonym: "nervus pudendae" EXACT LATIN [doi:10.1002/ca.23705]
 synonym: "nervus pudendales" EXACT LATIN [doi:10.1002/ca.23705]
 synonym: "pudenal nerve" RELATED [Wikipedia:Pudendal_nerve]
 synonym: "pudendal" BROAD [Wikipedia:Pudendal_nerve]
@@ -191093,8 +191093,8 @@ name: rima vulvae
 def: "The fissure between the labia majora" [https://www.thefreedictionary.com/pudendal+cleft]
 synonym: "pudendal cleft" EXACT [FMA:19995]
 synonym: "pudendal cleft" EXACT DEPRECATED [doi:10.1002/ca.23705]
-synonym: "rima pudendi" EXACT LATIN [A09.2.01.006]
 synonym: "rima pudendi" EXACT DEPRECATED [doi:10.1002/ca.23705]
+synonym: "rima pudendi" EXACT LATIN [A09.2.01.006]
 synonym: "urogenital cleft" BROAD [https://www.thefreedictionary.com/pudendal+cleft]
 synonym: "vulvar slit" EXACT [https://www.thefreedictionary.com/pudendal+cleft]
 xref: FMA:19995
@@ -225308,6 +225308,8 @@ xref: RO:0002489
 [Typedef]
 id: extends_fibers_into
 name: extends_fibers_into
+def: "X extends_fibers into Y iff there exists some neuron (N) and N has_soma_location X and N 'has synaptic IO in region' some Y" [https://orcid.org/0000-0002-7073-9172]
+holds_over_chain: RO:0002100 RO:0013001
 is_symmetric: true
 is_a: connected_to ! connected to