Code

New composite pipeline#3129

Code

Merged

gouttegd merged 20 commits intomasterobophenotype/uberon:masterfrom new-composite-pipelineobophenotype/uberon:new-composite-pipelineCopy head branch name to clipboardDec 1, 2023

+515,756-265,956

Commits

Commits on Nov 28, 2023

• Remove UBERON-modifying axiom in local copy of CEPH.

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• Factor conditional test in the LOCAL section.

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• Treat the Allen ontologies as "local imports".

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• Treat CL, SSSO, and ZFA as "local imports".

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Commits on Nov 29, 2023

• Fix the custom rules for downloading mirrors.

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• Add a mirror for the "SSSO" ontology.

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• Simplify treatment of "local imports".

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• Simplify treatment of EMAPA local import.

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• Store local imports in OFN format.

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• Properly import MmusDv and HsapDv.

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• Allow quickly refreshing all "local" imports.

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• Fix more old-style properties.

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• Overhaul the composite pipeline.

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• Update the XML catalog.

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Commits on Nov 30, 2023

• Add title and description to the composite- products.

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• Turn collected-metazoan.owl into a release artefact.

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• Remove old "collected" files.

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• Cleaning up Makefile.

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• Commit "local" imports.

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• Ignore top-level collected-metazoan.

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