Temporarily weakening domain of has-developmental-contribution-from t…

…o be an IC.

While this can be justified, it leads to violations across most AOs including Uberon
right now.
We can explore adding in future, this may involve distinguishing between true
developmental lineages (continuity of cells) and a weaker sense of tracing
continuity between parts of ICs in general (eg one lumen forming from two predecessors
when a membrane disappears)

See obophenotype/uberon#1324

Inn this commit I also strengthen the grouping relation to only
apply between continuants

src/ontology/ro-edit.owl

@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
-<rdf:RDF xmlns="http://purl.obolibrary.org/obo/ro.owl#"
-     xml:base="http://purl.obolibrary.org/obo/ro.owl"
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/ro.owl/"
+     xml:base="http://purl.obolibrary.org/obo/ro.owl/"
      xmlns:owl="http://www.w3.org/2002/07/owl#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
      xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"
@@ -753,6 +753,18 @@ Where we have an annotation assertion
 
 
 
+    <!-- http://purl.obolibrary.org/obo/R0_0009004 -->
+
+    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/R0_0009004">
+        <obo:IAO_0000112 xml:lang="en">sardine has consumer some homo sapiens</obo:IAO_0000112>
+        <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
+        <obo:IAO_0000115 xml:lang="en">&apos;has consumer&apos; is a relation between a material entity and an organism in which the former can normally be digested or otherwise absorbed by the latter without immediate or persistent ill effect.</obo:IAO_0000115>
+        <obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
+        <rdfs:label xml:lang="en">has consumer</rdfs:label>
+    </owl:ObjectProperty>
+
+
+
     <!-- http://purl.obolibrary.org/obo/RO_0000052 -->
 
     <rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0000052">
@@ -2951,7 +2963,7 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R.</obo:I
     <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002254">
         <rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002258"/>
         <owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002255"/>
-        <rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/CARO_0000003"/>
+        <rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
         <rdfs:range rdf:resource="http://purl.obolibrary.org/obo/CARO_0000003"/>
         <owl:propertyChainAxiom rdf:parseType="Collection">
             <rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000051"/>
@@ -3024,6 +3036,8 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R.</obo:I
     <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002258">
         <rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002324"/>
         <owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002286"/>
+        <rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
+        <rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
         <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
         <obo:IAO_0000115>Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p</obo:IAO_0000115>
         <obo:IAO_0000116 rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">false</obo:IAO_0000116>
@@ -7116,7 +7130,7 @@ Environments include natural environments or exposures, experimentally applied c
 
 
 
-<!-- http://purl.obolibrary.org/obo/RO_0009001 -->
+    <!-- http://purl.obolibrary.org/obo/RO_0009001 -->
 
     <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0009001">
         <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#IrreflexiveProperty"/>
@@ -7154,15 +7168,6 @@ Environments include natural environments or exposures, experimentally applied c
         <rdfs:label xml:lang="en">immersed in</rdfs:label>
     </owl:ObjectProperty>
 
-    <!-- http://purl.obolibrary.org/obo/RO_0009004 -->
-
-    <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/R0_0009004">
-        <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
-        <obo:IAO_0000112 xml:lang="en">sardine has consumer some homo sapiens</obo:IAO_0000112>
-        <obo:IAO_0000115 xml:lang="en">&apos;has consumer&apos; is a relation between a material entity and an organism in which the former can normally be digested or otherwise absorbed by the latter without immediate or persistent ill effect.</obo:IAO_0000115>
-        <obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
-        <rdfs:label xml:lang="en">has consumer</rdfs:label>
-    </owl:ObjectProperty>
 
 
     <!-- http://purl.obolibrary.org/obo/RO_0009005 -->
@@ -7176,8 +7181,7 @@ Environments include natural environments or exposures, experimentally applied c
         <obo:IAO_0000117>Damion Dooley</obo:IAO_0000117>
         <rdfs:label xml:lang="en">has primary substance added</rdfs:label>
     </owl:ObjectProperty>
-
-
+
 
 
     <!-- http://purl.obolibrary.org/obo/RO_HOM0000001 -->
@@ -7818,5 +7822,5 @@ Environments include natural environments or exposures, experimentally applied c
 
 
 
-<!-- Generated by the OWL API (version 4.2.8.20170104-2310) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.2.6.20160910-2108) https://github.com/owlcs/owlapi -->