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Update README.md
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YounessAzimzade authored Jan 17, 2025
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Expand Up @@ -12,7 +12,15 @@ pip install git+https://github.com/ocbe-uio/pCRscore.git

# Expected Input

This package takes cell fractions, likely from spatial proteomics, scRNA seq or estimations using deconvolution methods and clinical out come (pCR vs RD- residual disease). It is possible to provide the cohort alongside these information, otherwise the code randomly assigns the rows to discovery and validation cohorts.
This package takes cell fractions, likely from spatial proteomics, scRNA seq or estimations using deconvolution methods and clinical out come (pCR vs RD- residual disease). It is possible to provide the "cohort" info alongside these information, otherwise the code randomly assigns the rows to discovery and validation cohorts.
# Table Schematic Example

| Column 1 | Column 2 | Column 3 |
|-----------------|-----------------|----------------|
| Data Row 1 Col 1| Data Row 1 Col 2| Data Row 1 Col 3|
| Data Row 2 Col 1| Data Row 2 Col 2| Data Row 2 Col 3|
| Data Row 3 Col 1| Data Row 3 Col 2| Data Row 3 Col 3|


# Expected Output
For each cell type, a pCR score is assined and provided in csv file. Ucertanity values for these scores are also provided.
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