add docs/

ocbe-uio · Mar 11, 2024 · 9df1a11 · 9df1a11
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Showing 48 changed files with 2 additions and 10 deletions.
diff --git a/_quarto.yml b/_quarto.yml
@@ -1,6 +1,6 @@
 project:
   type: website
-  output-dir: .
+  output-dir: docs
 
 theme:
   light: default
@@ -34,12 +34,4 @@ format:
     grid: 
       sidebar-width: 350px
       margin-width: 350px
-
-  # sidebar:
-  #   title: "Survive with Omics"
-  #   pinned: true
-  #   tools: 
-  #     - icon: github
-  #       href: https://github.com/ocbe-uio/survomics
-  #       text: "Survive with Omics repo"
-
+
diff --git a/docs/fig/TCGA_adaptiveLasso.png b/docs/fig/TCGA_adaptiveLasso.png
diff --git a/docs/fig/TCGA_bayesEN.png b/docs/fig/TCGA_bayesEN.png
diff --git a/docs/fig/TCGA_bayesLassoM.png b/docs/fig/TCGA_bayesLassoM.png
diff --git a/docs/fig/TCGA_bayesSpikeSlab.png b/docs/fig/TCGA_bayesSpikeSlab.png
diff --git a/docs/fig/TCGA_bayeslasso.png b/docs/fig/TCGA_bayeslasso.png
diff --git a/docs/fig/TCGA_elastic.png b/docs/fig/TCGA_elastic.png
diff --git a/docs/fig/TCGA_lasso.png b/docs/fig/TCGA_lasso.png
diff --git a/docs/fig/TCGA_pca.png b/docs/fig/TCGA_pca.png
diff --git a/docs/fig/TCGA_surv_auc_lasso.png b/docs/fig/TCGA_surv_auc_lasso.png
diff --git a/docs/fig/TCGA_surv_brier_lasso.png b/docs/fig/TCGA_surv_brier_lasso.png
diff --git a/docs/fig/TCGA_surv_brier_t_lasso.png b/docs/fig/TCGA_surv_brier_t_lasso.png
diff --git a/docs/fig/TCGA_surv_calibration.png b/docs/fig/TCGA_surv_calibration.png
diff --git a/docs/fig/TCGA_surv_cindex_lasso.png b/docs/fig/TCGA_surv_cindex_lasso.png
diff --git a/docs/fig/TCGA_surv_iauc_lasso.png b/docs/fig/TCGA_surv_iauc_lasso.png
diff --git a/docs/fig/TCGA_surv_km1.png b/docs/fig/TCGA_surv_km1.png
diff --git a/docs/fig/TCGA_surv_km2.png b/docs/fig/TCGA_surv_km2.png
diff --git a/docs/fig/TCGA_surv_km_lasso.png b/docs/fig/TCGA_surv_km_lasso.png
diff --git a/docs/fig/TCGA_surv_km_lasso2.png b/docs/fig/TCGA_surv_km_lasso2.png
diff --git a/docs/fig/TCGA_surv_nomogram.png b/docs/fig/TCGA_surv_nomogram.png
diff --git a/docs/fig/TCGA_surv_roc.png b/docs/fig/TCGA_surv_roc.png
diff --git a/docs/fig/TCGA_survival.png b/docs/fig/TCGA_survival.png
diff --git a/docs/fig/TCGA_tsne.png b/docs/fig/TCGA_tsne.png
diff --git a/docs/fig/TCGA_umap.png b/docs/fig/TCGA_umap.png
diff --git a/docs/fig/mlr3_calibration_BS.png b/docs/fig/mlr3_calibration_BS.png
diff --git a/docs/fig/mlr3_calibration_RCLL.png b/docs/fig/mlr3_calibration_RCLL.png
diff --git a/docs/fig/mlr3_discrimination_msrs.png b/docs/fig/mlr3_discrimination_msrs.png
diff --git a/index.html → docs/index.html b/index.html → docs/index.html
diff --git a/search.json → docs/search.json b/search.json → docs/search.json
diff --git a/site_libs/bootstrap/bootstrap-dark.min.css → ...ite_libs/bootstrap/bootstrap-dark.min.css b/site_libs/bootstrap/bootstrap-dark.min.css → ...ite_libs/bootstrap/bootstrap-dark.min.css
diff --git a/site_libs/bootstrap/bootstrap-icons.css → docs/site_libs/bootstrap/bootstrap-icons.css b/site_libs/bootstrap/bootstrap-icons.css → docs/site_libs/bootstrap/bootstrap-icons.css
diff --git a/site_libs/bootstrap/bootstrap-icons.woff → .../site_libs/bootstrap/bootstrap-icons.woff b/site_libs/bootstrap/bootstrap-icons.woff → .../site_libs/bootstrap/bootstrap-icons.woff
diff --git a/site_libs/bootstrap/bootstrap.min.css → docs/site_libs/bootstrap/bootstrap.min.css b/site_libs/bootstrap/bootstrap.min.css → docs/site_libs/bootstrap/bootstrap.min.css
diff --git a/site_libs/bootstrap/bootstrap.min.js → docs/site_libs/bootstrap/bootstrap.min.js b/site_libs/bootstrap/bootstrap.min.js → docs/site_libs/bootstrap/bootstrap.min.js
diff --git a/site_libs/clipboard/clipboard.min.js → docs/site_libs/clipboard/clipboard.min.js b/site_libs/clipboard/clipboard.min.js → docs/site_libs/clipboard/clipboard.min.js
diff --git a/site_libs/quarto-html/anchor.min.js → docs/site_libs/quarto-html/anchor.min.js b/site_libs/quarto-html/anchor.min.js → docs/site_libs/quarto-html/anchor.min.js
diff --git a/site_libs/quarto-html/popper.min.js → docs/site_libs/quarto-html/popper.min.js b/site_libs/quarto-html/popper.min.js → docs/site_libs/quarto-html/popper.min.js
diff --git a/...-html/quarto-syntax-highlighting-dark.css → ...-html/quarto-syntax-highlighting-dark.css b/...-html/quarto-syntax-highlighting-dark.css → ...-html/quarto-syntax-highlighting-dark.css
diff --git a/...uarto-html/quarto-syntax-highlighting.css → ...uarto-html/quarto-syntax-highlighting.css b/...uarto-html/quarto-syntax-highlighting.css → ...uarto-html/quarto-syntax-highlighting.css
diff --git a/site_libs/quarto-html/quarto.js → docs/site_libs/quarto-html/quarto.js b/site_libs/quarto-html/quarto.js → docs/site_libs/quarto-html/quarto.js
diff --git a/site_libs/quarto-html/tippy.css → docs/site_libs/quarto-html/tippy.css b/site_libs/quarto-html/tippy.css → docs/site_libs/quarto-html/tippy.css
diff --git a/site_libs/quarto-html/tippy.umd.min.js → docs/site_libs/quarto-html/tippy.umd.min.js b/site_libs/quarto-html/tippy.umd.min.js → docs/site_libs/quarto-html/tippy.umd.min.js
diff --git a/site_libs/quarto-nav/headroom.min.js → docs/site_libs/quarto-nav/headroom.min.js b/site_libs/quarto-nav/headroom.min.js → docs/site_libs/quarto-nav/headroom.min.js
diff --git a/site_libs/quarto-nav/quarto-nav.js → docs/site_libs/quarto-nav/quarto-nav.js b/site_libs/quarto-nav/quarto-nav.js → docs/site_libs/quarto-nav/quarto-nav.js
diff --git a/site_libs/quarto-search/autocomplete.umd.js → ...te_libs/quarto-search/autocomplete.umd.js b/site_libs/quarto-search/autocomplete.umd.js → ...te_libs/quarto-search/autocomplete.umd.js
diff --git a/site_libs/quarto-search/fuse.min.js → docs/site_libs/quarto-search/fuse.min.js b/site_libs/quarto-search/fuse.min.js → docs/site_libs/quarto-search/fuse.min.js
diff --git a/site_libs/quarto-search/quarto-search.js → .../site_libs/quarto-search/quarto-search.js b/site_libs/quarto-search/quarto-search.js → .../site_libs/quarto-search/quarto-search.js
diff --git a/survomics.html → docs/survomics.html b/survomics.html → docs/survomics.html