ODF OPEN DATA EXTRACTION SCRIPTS

Bug fixes and development notes

Please feel free to submit any suggestions and bug fixes by creating an issue in the "Issues" tab on Github.

To contribute code, please submit a pull request using the "Pull Requests" section in Github.

Please direct any other code-related quries to: jurie.germishuys[at]combine.se

Open Data Search Engines

1. Google Dataset Search (BETA) https://toolbox.google.com/datasetsearch
2. Ocean Data Platform by Cognite Data Fusion (UNDER CONSTRUCTION) https://www.oceandata.earth/
3. EU Open Data Portal: https://data.europa.eu/euodp/en/data/

FAIR Data Practices

• https://www.fairsfair.eu/

Useful data endpoints for current ODF use cases

WFS (data) / WMS (images) / CWS (metadata) (see http://www.opensealab.eu/data2019)

Exposure

https://ows.emodnet-bathymetry.eu/

• WFS
• WMS
• CWS

Shipping traffic and main ports

https://ows.emodnet-humanactivities.eu/

• WFS
• WMS

Seabed substrate

http://drive.emodnet-geology.eu/

• WFS
• WMS
• CWS

REST API

Depth (depth_sample and depth_profile)

https://rest.emodnet-bathymetry.eu/

Salinity, Temperature

Baltic Sea: https://opendata-download-metobs.smhi.se/api
North Sea: ftp://vftp2.ifremer.fr/public/seadatanet-north_sea-temperaturesalinity_aggregated/SDC_NS_DATA_V1/

PACKAGES

1. http://geopandas.org/
2. https://geopython.github.io/OWSLib/
3. https://www.geotools.org/ (JAVA)
4. https://python-visualization.github.io/folium/
5. https://pypi.org/project/keplergl/
6. https://pypi.org/project/PyCRS/

REFERENCES

1. Marine Data Portals: http://www.coastalwiki.org/wiki/Marine_data_portals_and_tools#Data_tools
2. EMODNET: http://www.emodnet.eu/
3. SMHI Oceanographic Data documentation: http://opendata.smhi.se/apidocs/ocobs/index.html
4. Species data: https://www.gbif.org/occurrence/download/0036968-190918142434337
5. Seadatanet: https://www.seadatanet.org/
6. Research on Killer Shrimp: https://www.researchgate.net/publication/251571516_A_Preliminary_Assessment_of_the_Impact_of_Dikerogammarus_villosus_on_Ecological_status_for_the_Water_Framework_Directive