biomisc

collection of miscellaneous command line bioinformatic scripts(see the wiki page for documentation and depedences)

windows and linux binaries(no depedences needed)

1. subset pdb to fasta:
2. extract or remove seqs from fasta:
3. trim fasta:
4. tab trim to fasta:
5. trim fasta to tab:
6. digital ligation:
7. subset by aa:

linux binaries only(no depedences needed)

1. pdbs secondary structure statistics:
2. split pdb by chain:
3. subset pdb suite:
4. trim fasta by coords:
5. trim protein by coords:
6. extract seqs from fasta optimized:
7. fasta to header:
8. split multi-fasta to single-fasta: