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Read anndata as napari points and tracks #81
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@kkyoda - I've played around quite a bit with the This expects each point to only be in 1 track, and uses a "graph" dictionary to link the tracks. With these changes, you can now view the lineage of the tree: |
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Codecov ReportPatch coverage:
Additional details and impacted files@@ Coverage Diff @@
## main #81 +/- ##
===========================================
- Coverage 87.56% 71.36% -16.20%
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Files 3 4 +1
Lines 185 241 +56
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+ Hits 162 172 +10
- Misses 23 69 +46
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Closing since ome/ngff#64 is closed |
NB: this PR requires ome/ome-zarr-py#256
TODO: Once that PR has been merged and released, need to bump the requirement version for ome-zarr here.
This uses code borrowed from @kkyoda at https://github.com/openssbd/bdz/ to translate anndata tables into napari points and tracks.
AnnData tables must be in the format generated by openssbd/bdz#2
NB: the spec for tables is currently open PR at ome/ngff#64
To test: