Archive status #555

chris-allan · 2024-05-15T14:16:46Z

Adds archive status to the tree metadata, visually in the tree and to image data JSON.

jburel · 2024-05-16T08:22:08Z

This PR leads to some test failures see https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-test-integration/64/

will-moore · 2024-05-16T09:27:16Z

Tested on merge ci with
$ omero obj update Image:1673 archived=True
And this displays correctly in webclient as shown above.

My only question is whether users need some clue as to what the red dot means. I guess this might not be necessary if all users have been trained accordingly, (which may well happen in places that are using archiving, since users should know to expect different behaviour from those images?), but it seems that there could be some who are confused by the red dot.
Possibly a tooltip on the red-dot icon (might be a bit painful digging into how to do this in jstree) or in the right panel core_metadata.html add a row Archived: true (only if True - don't need to add Archived: false for all other images)
or something else?

chris-allan · 2024-05-28T12:13:11Z

My only question is whether users need some clue as to what the red dot means. I guess this might not be necessary if all users have been trained accordingly, (which may well happen in places that are using archiving, since users should know to expect different behaviour from those images?), but it seems that there could be some who are confused by the red dot.
Possibly a tooltip on the red-dot icon (might be a bit painful digging into how to do this in jstree) or in the right panel core_metadata.html add a row Archived: true (only if True - don't need to add Archived: false for all other images)
or something else?

Likely. I only used image_locked16.png because it was available. I expect the red-dot is not particularly informative and this deserves a dedicated icon and a tooltip. Can also add something to core_metadata.html as a demonstration of what's possible.

chris-allan · 2024-05-28T12:22:57Z

Added right-hand panel visual:

chris-allan · 2024-05-28T12:41:04Z

Added a tooltip to the tree (visuals are from Windows and will look slightly different depending on operating system):

chris-allan · 2024-05-28T12:55:14Z

@jburel: ome/openmicroscopy#6389 should resolve the test failures.

…ing populated (See ome/omero-web#555))

Repository: ome/openmicroscopy Excluded PRs: - PR 6379 jburel 'TMP: build david's s3 Zarr branch' (exclude comment) - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment) - PR 6212 jburel 'add test to import images' (exclude comment) - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) Already up to date. Merged PRs: - PR 6309 jburel 'add try block' - PR 6353 jburel 'remove dependencies' - PR 6376 snoopycrimecop 'update dependencies' - PR 6385 jburel 'remove test using deprecated method' - PR 6388 sbesson 'Upgrade Ivy to 2.5.2' - PR 6389 chris-allan 'Handle archive status being populated (See ome/omero-web#555)' Generated by OMERO-push#77 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-push/77/)

…ing populated (See ome/omero-web#555))

Repository: ome/openmicroscopy Excluded PRs: - PR 6379 jburel 'TMP: build david's s3 Zarr branch' (exclude comment) - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment) - PR 6212 jburel 'add test to import images' (exclude comment) - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) Already up to date. Merged PRs: - PR 6309 jburel 'add try block' - PR 6353 jburel 'remove dependencies' - PR 6376 snoopycrimecop 'update dependencies' - PR 6385 jburel 'remove test using deprecated method' - PR 6388 sbesson 'Upgrade Ivy to 2.5.2' - PR 6389 chris-allan 'Handle archive status being populated (See ome/omero-web#555)' Generated by OMERO-push#78 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-push/78/)

…ing populated (See ome/omero-web#555))

Repository: ome/openmicroscopy Excluded PRs: - PR 6379 jburel 'TMP: build david's s3 Zarr branch' (exclude comment) - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment) - PR 6212 jburel 'add test to import images' (exclude comment) - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) Already up to date. Merged PRs: - PR 6309 jburel 'add try block' - PR 6353 jburel 'remove dependencies' - PR 6376 snoopycrimecop 'update dependencies' - PR 6385 jburel 'remove test using deprecated method' - PR 6388 sbesson 'Upgrade Ivy to 2.5.2' - PR 6389 chris-allan 'Handle archive status being populated (See ome/omero-web#555)' Generated by OMERO-push#19 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-push/19/)

…ing populated (See ome/omero-web#555))

Repository: ome/openmicroscopy Excluded PRs: - PR 6379 jburel 'TMP: build david's s3 Zarr branch' (exclude comment) - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment) - PR 6212 jburel 'add test to import images' (exclude comment) - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) Already up to date. Merged PRs: - PR 6309 jburel 'add try block' - PR 6353 jburel 'remove dependencies' - PR 6376 snoopycrimecop 'update dependencies' - PR 6385 jburel 'remove test using deprecated method' - PR 6388 sbesson 'Upgrade Ivy to 2.5.2' - PR 6389 chris-allan 'Handle archive status being populated (See ome/omero-web#555)' Generated by OMERO-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-push/79/)

…ing populated (See ome/omero-web#555))

Repository: ome/openmicroscopy Excluded PRs: - PR 6379 jburel 'TMP: build david's s3 Zarr branch' (exclude comment) - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment) - PR 6212 jburel 'add test to import images' (exclude comment) - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) Already up to date. Merged PRs: - PR 6309 jburel 'add try block' - PR 6353 jburel 'remove dependencies' - PR 6376 snoopycrimecop 'update dependencies' - PR 6385 jburel 'remove test using deprecated method' - PR 6388 sbesson 'Upgrade Ivy to 2.5.2' - PR 6389 chris-allan 'Handle archive status being populated (See ome/omero-web#555)' Generated by OMERO-push#20 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-push/20/)

…ing populated (See ome/omero-web#555))

Repository: ome/openmicroscopy Excluded PRs: - PR 6379 jburel 'TMP: build david's s3 Zarr branch' (exclude comment) - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment) - PR 6212 jburel 'add test to import images' (exclude comment) - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) Already up to date. Merged PRs: - PR 6309 jburel 'add try block' - PR 6353 jburel 'remove dependencies' - PR 6376 snoopycrimecop 'update dependencies' - PR 6385 jburel 'remove test using deprecated method' - PR 6388 sbesson 'Upgrade Ivy to 2.5.2' - PR 6389 chris-allan 'Handle archive status being populated (See ome/omero-web#555)' Generated by OMERO-push#80 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-push/80/)

lunson · 2024-06-03T14:46:48Z

Options for iconography

and the image files for each of the options:
icons_archive.zip

…ing populated (See ome/omero-web#555))

Repository: ome/openmicroscopy Excluded PRs: - PR 6379 jburel 'TMP: build david's s3 Zarr branch' (exclude comment) - PR 6376 snoopycrimecop 'update dependencies' (status: failure) - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment) - PR 6212 jburel 'add test to import images' (exclude comment) - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) Already up to date. Merged PRs: - PR 6309 jburel 'add try block' - PR 6353 jburel 'remove dependencies' - PR 6385 jburel 'remove test using deprecated method' - PR 6388 sbesson 'Upgrade Ivy to 2.5.2' - PR 6389 chris-allan 'Handle archive status being populated (See ome/omero-web#555)' Generated by OMERO-push#21 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-push/21/)

Repository: ome/openmicroscopy Excluded PRs: - PR 6398 Tom-TBT 'Perceptibly uniform luts' (user: Tom-TBT) - PR 6379 jburel 'TMP: build david's s3 Zarr branch' (exclude comment) - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) - PR 6212 jburel 'add test to import images' (exclude comment) - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) Already up to date. Merged PRs: - PR 6309 jburel 'add try block' - PR 6353 jburel 'remove dependencies' - PR 6376 snoopycrimecop 'update dependencies' - PR 6385 jburel 'remove test using deprecated method' - PR 6389 chris-allan 'Handle archive status being populated (See ome/omero-web#555)' - PR 6395 sbesson 'Update IceGrid templates to make the OMERO.tables module configurable' - PR 6397 knabar 'Tests for get_where_list and slice table API calls' Generated by OMERO-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-push/125/)

…ing populated (See ome/omero-web#555))

Repository: ome/openmicroscopy Excluded PRs: - PR 6398 Tom-TBT 'Perceptibly uniform luts' (user: Tom-TBT) - PR 6379 jburel 'TMP: build david's s3 Zarr branch' (exclude comment) - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) - PR 6212 jburel 'add test to import images' (exclude comment) - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) Already up to date. Merged PRs: - PR 6309 jburel 'add try block' - PR 6353 jburel 'remove dependencies' - PR 6376 snoopycrimecop 'update dependencies' - PR 6385 jburel 'remove test using deprecated method' - PR 6389 chris-allan 'Handle archive status being populated (See ome/omero-web#555)' - PR 6395 sbesson 'Update IceGrid templates to make the OMERO.tables module configurable' - PR 6397 knabar 'Tests for get_where_list and slice table API calls' Generated by OMERO-push#126 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-push/126/)

…ing populated (See ome/omero-web#555))

Repository: ome/openmicroscopy Excluded PRs: - PR 6398 Tom-TBT 'Perceptibly uniform luts' (user: Tom-TBT) - PR 6379 jburel 'TMP: build david's s3 Zarr branch' (exclude comment) - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) - PR 6212 jburel 'add test to import images' (exclude comment) - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) Already up to date. Merged PRs: - PR 6309 jburel 'add try block' - PR 6353 jburel 'remove dependencies' - PR 6376 snoopycrimecop 'update dependencies' - PR 6385 jburel 'remove test using deprecated method' - PR 6389 chris-allan 'Handle archive status being populated (See ome/omero-web#555)' - PR 6395 sbesson 'Update IceGrid templates to make the OMERO.tables module configurable' - PR 6397 knabar 'Tests for get_where_list and slice table API calls' Generated by OMERO-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-push/127/)

…ing populated (See ome/omero-web#555))

Repository: ome/openmicroscopy Excluded PRs: - PR 6398 Tom-TBT 'Perceptibly uniform luts' (user: Tom-TBT) - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) - PR 6212 jburel 'add test to import images' (exclude comment) - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) Already up to date. Merged PRs: - PR 6309 jburel 'add try block' - PR 6353 jburel 'remove dependencies' - PR 6385 jburel 'remove test using deprecated method' - PR 6389 chris-allan 'Handle archive status being populated (See ome/omero-web#555)' - PR 6395 sbesson 'Update IceGrid templates to make the OMERO.tables module configurable' - PR 6397 knabar 'Tests for get_where_list and slice table API calls' Generated by OMERO-push#128 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-push/128/)

…ing populated (See ome/omero-web#555))

Repository: ome/openmicroscopy Excluded PRs: - PR 6398 Tom-TBT 'Perceptibly uniform luts' (user: Tom-TBT) - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) - PR 6212 jburel 'add test to import images' (exclude comment) - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) Already up to date. Merged PRs: - PR 6309 jburel 'add try block' - PR 6353 jburel 'remove dependencies' - PR 6385 jburel 'remove test using deprecated method' - PR 6389 chris-allan 'Handle archive status being populated (See ome/omero-web#555)' - PR 6395 sbesson 'Update IceGrid templates to make the OMERO.tables module configurable' - PR 6397 knabar 'Tests for get_where_list and slice table API calls' - PR 6399 snoopycrimecop 'update dependencies' Generated by OMERO-push#129 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-push/129/)

…ing populated (See ome/omero-web#555))

Repository: ome/openmicroscopy Excluded PRs: - PR 6398 Tom-TBT 'Perceptibly uniform luts' (user: Tom-TBT) - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) - PR 6212 jburel 'add test to import images' (exclude comment) - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) Already up to date. Merged PRs: - PR 6309 jburel 'add try block' - PR 6353 jburel 'remove dependencies' - PR 6385 jburel 'remove test using deprecated method' - PR 6389 chris-allan 'Handle archive status being populated (See ome/omero-web#555)' - PR 6397 knabar 'Tests for get_where_list and slice table API calls' - PR 6400 jburel 'Prep 5.6.12' Generated by OMERO-push#130 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-push/130/)

knabar · 2024-07-29T08:48:15Z

New icon looks good:

Handle archive status being populated (See ome/omero-web#555)

imagesc-bot · 2024-07-29T21:40:46Z

This pull request has been mentioned on Image.sc Forum. There might be relevant details there:

https://forum.image.sc/t/releases-of-omero-server-5-6-12-and-omero-web-5-27-0/99795/1

There were certain downstream omero-web plugins which were using `_marshal_image()`. This refactors the changes of ome#555 such that the prototype of `_marshal_image()` is maintained and a new `_marshal_image_map()` is added to give us options going forward for scalability.

… for backward compatibility)

Repository: ome/omero-web Excluded PRs: - PR 571 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 568 Tom-TBT 'Perceptibly uniform luts for OMERO.web' (user: Tom-TBT) - PR 535 will-moore 'Initial working browser history' (stage: draft) - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure) Already up to date. Merged PRs: - PR 527 will-moore 'Add some initial CSP settings to test' - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' - PR 574 will-moore 'Fix word wrap for names' - PR 576 will-moore 'webclient page scaleable, login page device-width' - PR 577 chris-allan 'Refactors ome#555 to allow for backward compatibility' Generated by OMERO-python-superbuild-push#157 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/157/)

… for backward compatibility)

Repository: ome/omero-web Excluded PRs: - PR 571 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 568 Tom-TBT 'Perceptibly uniform luts for OMERO.web' (user: Tom-TBT) - PR 535 will-moore 'Initial working browser history' (stage: draft) - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure) Already up to date. Merged PRs: - PR 527 will-moore 'Add some initial CSP settings to test' - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' - PR 574 will-moore 'Fix word wrap for names' - PR 576 will-moore 'webclient page scaleable, login page device-width' - PR 577 chris-allan 'Refactors ome#555 to allow for backward compatibility' Generated by OMERO-python-superbuild-push#158 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/158/)

Refactors #555 to allow for backward compatibility

Repository: ome/omero-web Excluded PRs: - PR 568 Tom-TBT 'Perceptibly uniform luts for OMERO.web' (user: Tom-TBT) - PR 535 will-moore 'Initial working browser history' (stage: draft) - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure) Updating 7cd445c..2b30141 Previously merged: - PR 578 knabar 'Update changelog' - PR 577 chris-allan 'Refactors ome#555 to allow for backward compatibility' - PR 571 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' Merged PRs: - PR 527 will-moore 'Add some initial CSP settings to test' - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' - PR 574 will-moore 'Fix word wrap for names' - PR 576 will-moore 'webclient page scaleable, login page device-width' Generated by OMERO-python-superbuild-push#159 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/159/)

Repository: ome/omero-web Excluded PRs: - PR 568 Tom-TBT 'Perceptibly uniform luts for OMERO.web' (user: Tom-TBT) - PR 535 will-moore 'Initial working browser history' (stage: draft) - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure) Updating 7cd445c..2b30141 Previously merged: - PR 578 knabar 'Update changelog' - PR 577 chris-allan 'Refactors ome#555 to allow for backward compatibility' - PR 571 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' Merged PRs: - PR 527 will-moore 'Add some initial CSP settings to test' - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' - PR 574 will-moore 'Fix word wrap for names' - PR 576 will-moore 'webclient page scaleable, login page device-width' Generated by OMERO-python-superbuild-push#160 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/160/)

Repository: ome/omero-web Excluded PRs: - PR 568 Tom-TBT 'Perceptibly uniform luts for OMERO.web' (user: Tom-TBT) - PR 535 will-moore 'Initial working browser history' (stage: draft) - PR 168 stick 'Changes to nginx @maintenance handler' (status: failure) Updating 7cd445c..2b30141 Previously merged: - PR 578 knabar 'Update changelog' - PR 577 chris-allan 'Refactors ome#555 to allow for backward compatibility' - PR 571 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' Merged PRs: - PR 527 will-moore 'Add some initial CSP settings to test' - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' - PR 574 will-moore 'Fix word wrap for names' - PR 576 will-moore 'webclient page scaleable, login page device-width' Generated by OMERO-python-superbuild-push#161 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/161/)

chris-allan added 3 commits May 15, 2024 13:43

Provide archive status to tree

acd2c33

If archived, change the icon

8a5c47f

Add archive status to image data JSON

6bba355

knabar added this to the 5.27.0 milestone May 21, 2024

Add archive status to the right-hand panel

bbb769b

Add a tooltip

a5fceca

Always use a boolean

59392ac

chris-allan added a commit to chris-allan/openmicroscopy that referenced this pull request May 28, 2024

Handle archive status being populated (See ome/omero-web#555)

9b14804

chris-allan mentioned this pull request May 28, 2024

Handle archive status being populated (See ome/omero-web#555) ome/openmicroscopy#6389

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merge develop -Dorg -Ssuccess-only: PR 6389 (Handle archive status be…

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…ing populated (See ome/omero-web#555))

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merge develop -Dorg -Ssuccess-only: PR 6389 (Handle archive status be…

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…ing populated (See ome/omero-web#555))

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merge develop -Dorg -Ssuccess-only: PR 6389 (Handle archive status be…

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…ing populated (See ome/omero-web#555))

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merge develop -Dorg -Ssuccess-only: PR 6389 (Handle archive status be…

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…ing populated (See ome/omero-web#555))

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merge develop -Dorg -Ssuccess-only: PR 6389 (Handle archive status be…

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…ing populated (See ome/omero-web#555))

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merge develop -Dorg -Ssuccess-only: PR 6389 (Handle archive status be…

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…ing populated (See ome/omero-web#555))

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merge develop -Dorg -Ssuccess-only: PR 6389 (Handle archive status be…

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…ing populated (See ome/omero-web#555))

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merge develop -Dorg -Ssuccess-only: PR 6389 (Handle archive status be…

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merge develop -Dorg -Ssuccess-only: PR 6389 (Handle archive status be…

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merge develop -Dorg -Ssuccess-only: PR 6389 (Handle archive status be…

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merge develop -Dorg -Ssuccess-only: PR 6389 (Handle archive status be…

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merge develop -Dorg -Ssuccess-only: PR 6389 (Handle archive status be…

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…ing populated (See ome/omero-web#555))

Switch to new image_locked_slash16.png

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knabar merged commit 0204b31 into ome:master Jul 29, 2024
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jburel added a commit to ome/openmicroscopy that referenced this pull request Jul 29, 2024

Merge pull request #6389 from chris-allan/archive-status

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Handle archive status being populated (See ome/omero-web#555)

sbesson mentioned this pull request Aug 23, 2024

Fix breaking change: _marshal_images() handles missing archived flag #575

Closed

chris-allan mentioned this pull request Aug 27, 2024

Refactors #555 to allow for backward compatibility #577

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merge master -Dorg -Ssuccess-only: PR 577 (Refactors ome#555 to allow…

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… for backward compatibility)

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merge master -Dorg -Ssuccess-only: PR 577 (Refactors ome#555 to allow…

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… for backward compatibility)

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Merge pull request #577 from chris-allan/archive-status

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Refactors #555 to allow for backward compatibility

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