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Release version 2.2.1 #70

Merged
merged 132 commits into from
Apr 19, 2024
Merged

Release version 2.2.1 #70

merged 132 commits into from
Apr 19, 2024

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alexzwanenburg
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@alexzwanenburg
Added automated test for continous integration.
ed3430f
@alexzwanenburg
Don't run perturbation test in auto_ci.
3bf519e
@alexzwanenburg
Set up workflow.
0f11ce0
@alexzwanenburg
Run workflow on push (for testing purposes).
11af7a4
@alexzwanenburg
Switch to newer setup-python action.
5121c71
@alexzwanenburg
Changed tests to be agnostic to file ordering,
f5a20f3
@alexzwanenburg
Update to actions/setup-python@v5
71fb818
@alexzwanenburg
Differentiate between push and pull actions for automated CI.
af63045
@alexzwanenburg
Fixed unintended event trigger.
9409280
@alexzwanenburg
Fixed incorrect matrices.
e076183
@alexzwanenburg
Fixed names.
7a4e4e4
@alexzwanenburg
Added fall-back options for missing ray module.
bf61675
@alexzwanenburg
Add missing argument.
9a46eca
@alexzwanenburg
Update version-release.md
4c88382
@alexzwanenburg
Made ray package conditional.
3a74c77
@alexzwanenburg
Removed stated support for 3.13, as support is untested.
c4bffba
@alexzwanenburg
Added python version 3.12 for continuous integration.
c901acc
@alexzwanenburg
Fixed incorrect quotation marks.
f5e1b02
@alexzwanenburg
Allow for manual triggering of workflow.
e9667bf
@alexzwanenburg alexzwanenburg linked an issue Mar 26, 2024 that may be closed by this pull request
automated testing #68
Closed
@alexzwanenburg alexzwanenburg mentioned this pull request Mar 26, 2024
Closed
@alexzwanenburg
Implemented tests for SUV conversion.
264401d 
#75
@alexzwanenburg
Ignore profiling folder.
c08c90f
@alexzwanenburg
Prevent unnecessary copying if images and masks are on the file syste…
72add43 
…m anyway.
@alexzwanenburg
Remove metadata after importing in importing images and masks.
da9915e
@alexzwanenburg
Add remove_metadata override method for file stacks.
cfede90
@alexzwanenburg
Do not copy unnecessary data in dicom_file_rtstruct.to_object
2a40bf5
@alexzwanenburg
Add limited and include_image arguments to load_metadata.
256e09c
@alexzwanenburg
Load metadata when a tag is required for completing the file.
58deb0b
@alexzwanenburg
Complete method no longer forces loading metadata, but delays this un…
c932bed 
…til required by one of its _complete_* methods.
@alexzwanenburg
DICOM files are no longer read twice in load_data_generic.
7aca535
@alexzwanenburg
Fixed two incomplete dicom tags.
90ef97c
@alexzwanenburg
Fixed too short tags.
37b61c0
@alexzwanenburg
Populate _get_limited_metadata_tags
8d03a50
@alexzwanenburg
Add self because of reference to super()
d3e667a
@alexzwanenburg
Add missing tag.
1f44cd6
@alexzwanenburg
Checks require only limited metadata.
c6b4b15
@alexzwanenburg
Read dicom depending on limited.
ee4ed65 
Limited reads only specific tags.
@alexzwanenburg
Ensure that metadata are loaded for itk and numpy files.
fb8908f
@alexzwanenburg
Merge _get_limited_metada_tags into the main DICOM file classes.
3ff94f3 
pydicom will read the header entirely anyway, so its cheaper to read it as few times as possible.
@alexzwanenburg
Reduce the number of times DICOM metadata need to be read from file.
f1000d3 
This now happens only twice:
1. a small metadata subset for selecting images and masks
2. full metadata and image during the main workflow.
@alexzwanenburg
Prevent unnecessary loading of image metadata in to_object methods of…
28a4315 
… mask files.
@alexzwanenburg
Added metadata tags required to process RTDose files.
4befadb
@alexzwanenburg
Update to tutorial text.
495adad
@alexzwanenburg
Added figure that shows where MIRP fits in.
ef1de73
@alexzwanenburg
Update text on the landing page.
12997f6
@alexzwanenburg
Update introduction text.
d40e6f1
@alexzwanenburg alexzwanenburg removed a link to an issue Apr 19, 2024
JOSS review item: CI #75
Closed
@alexzwanenburg alexzwanenburg merged commit cfa7137 into master Apr 19, 2024
6 checks passed
@alexzwanenburg alexzwanenburg deleted the dev2.2.1 branch April 19, 2024 14:55
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