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covid-19 repository

To make a local copy of this repository run the following two commands:

git clone git@github.com:oneluckypic/covid-19.git

cd covid-19

On Windows:

update_data.bat

On Mac:

./update_data.sh

Resources

3Blue1Brown

Exponential growth and epidemics

Simulating epidemics

GIS

Title Author Notes
Map it with Python! Intro to GIS and Python mapping modules Christy Heaton code, epsg.io, matplotlib, geopandas (uses shapely), folium w/ leaflet.js, rise (python slides), Nearmap, Stamen, mapbox, Map Time Seattle!
Geospatial data analysis and visualization in Python Halfdan Rump osmnx (by Geoff Boeing), geopandas, folium

Random Software

  • vega (for plotting)
  • color brewer (color advice for cartography)
  • Chris Roach Github
  • Plotly! (Can do interative maps)

Python Geospatial Libraries

  • geopandas - Working with spatial data is fun again!
  • shapely - For geometry handling
  • rtree - For efficiently querying spatial data
  • pyshp - for reading and writing shapefiles (in pure Python)
  • fiona - for making it easy to read/write geospatial data formats
  • ogr/gdal - for reading, writeing and transforming goespatial data formats
  • geopy - for geolocating and things like that
  • pysal - spatial ecenometrics, exploratory spatial and spatio-temporal data analysis, spatial clustering (and more)
  • descartes - for plotting geometries in matplotlib

NYC Data

Zip Code Population Data Zip Code Shapefiles

Learning Geospatial Analysis

  • Canadian Geospatial Information System Documentary
  • 1967 Urban Expansion
  • GIS GUIs (open source)
    • Quantum GIS (QGIS)
    • Geographic Resources Analysis Support System (GRASS)
  • Elevation Data
    • Digital Elevation Model (DEM)
    • First in 1986 from French space agency (Centre National d'etudes Spatiales (CNES))
    • February 2000 Space Shuttle Endeavor conducted the Shuttle Radar Topography Mission (SRTM), which collected elevation data of over 80% of the Earth's surface using a special radar antenna configuration that allowed a single pass.
    • 2009 the joint US and Japanese mission using the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) sensor aborad NASA's Terra satellite. Captured 99% of the Earth's surface but has proven to have minor data issues.
    • SRTM remains the gold standard.
    • TerraSAR-X and TanDEM-X launched by Germany collected WorldDEM that was released on April 15, 2014. Dataset has a relative accuracy of 2 meters and an absolute accuracy of 4 meters.
  • How to Lie with Maps, Mark Monmonier
  • ISO-19115(-1)(-2)(-3) define standards for geospatial metadata
  • The Open Geospatial Consortium (OGC), which created the Catalog Service for the Web (CSW), is used to manage metadata. The pycsw Python library implements the CSW standard.
  • A datum is a model of the Earth's surface that's used to match the location of features on the Earth to a coordinate system. One common datum is called WGS 84 and is used by GPS.
  • A dissolve operation creates a single polygon out of adjacent polygons.
  • ray casting algorithm - The most common and efficient algorithm to detect whether a point is inside a polygon.

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