v1.9.6

Added

• Added option to input template strings from external file #1152

Changed

• Updated duplicate_exact_syonym report query to be case-insensitive and ignore synoyms annotated as abbreviation or acronym synonym types #1179
• Extend --drop-axiom-annotations option to support value-specific removal of axiom annotations #1193
• Add --enforce-obo-format, --exclude-named-classes and --include-subclass-of features to relax command #1060, #1183
• Updated obographs to version 0.3.1(https://github.com/geneontology/obographs/releases/tag/v0.3.1)
• Updated OWL API to 4.5.29. This includes a major update to OBO Format which now supports IDSPACE declarations(owlcs/owlapi#1102) (non-OBO Foundry prefixes).
• Updated Elk to version 0.6.0, see here(liveontologies/elk-reasoner#48 (comment)).

Fixed

• '--annotate-with-source true' does not work with extract --method subset #1160
• Fix how Template adds entities to the QuotedEntityChecker #1104
• merge and 'annotate' operations '--annotate-defined-by' excludes reserved OWL 2 vocabularies #1171
• Handle IRIs that are not entities in export #1168
• Fix integration tests #1181
• robot repair is fixed to be more flexible, to enable partial repairs #1194
• Invalid Xrefs test has been fixed to recognise invalid CURIEs correctly #1127
• Fix issue with correctly determining base entities #1108