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28 Open 81 Closed
28 Open 81 Closed
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Issues list

Bioframe.overlap RAM error
#219 opened Aug 3, 2024 by talipzengin
1
Python 3.13: test_assembly_info fails with AttributeError
#209 opened May 10, 2024 by penguinpee
2
Restore and document additional return_input args for overlap
#197 opened Apr 14, 2024 by nvictus
default dtypes & core.construction
#188 opened Feb 12, 2024 by smitkadvani
4
to_bigwig: wrong format for chromsizes enhancement
#168 opened Aug 18, 2023 by rusch-emma
2
Assorted bugs and possibly undefined behavior in closest bug
#167 opened Jul 16, 2023 by endrebak
1
Suggestion for updating the closest function. enhancement
#163 opened Jun 7, 2023 by WANGchuang715
6
bioframe.assign_view drop_unassigned drops all NaNs? question
#160 opened May 31, 2023 by Phlya
3
reading bigwigs into dataframes enhancement
#153 opened May 25, 2023 by gfudenberg
Passing metadata (/configuration?) through DataFrame.attrs enhancement
#151 opened May 7, 2023 by ivirshup
Strand-aware expand (bedtools slop) enhancement
#144 opened Apr 18, 2023 by ivirshup
13
Bring back GTF attributes parser? enhancement
#141 opened Apr 3, 2023 by nvictus
2
Streamlining input validation for ops enhancement
#140 opened Apr 3, 2023 by nvictus
Alternative DataFrame class(es) for OOC + speed enhancement
#137 opened Mar 6, 2023 by ivirshup
4
strand-aware closest enhancement
#129 opened Nov 7, 2022 by gfudenberg
1
updates for schemas enhancement
#123 opened Sep 28, 2022 by gfudenberg
4 tasks
8
improve documentation for overlap "return_overlap" argument enhancement
#122 opened Sep 28, 2022 by gonzalobenegas
3
bin-table operations enhancement
#116 opened Jun 15, 2022 by agalitsyna
5 tasks
1
make_viewframe takes forever on 100_000 entries enhancement
#114 opened Mar 18, 2022 by sergpolly
1
should we add is_equal to checks for frames comparison (the way we want it) ? question
#97 opened Sep 17, 2021 by sergpolly
1
behavior of on=[] enhancement
#91 opened Aug 26, 2021 by gfudenberg
2
add error chaining for is_viewframe enhancement
#88 opened Aug 17, 2021 by gfudenberg
Creating a more extensive and generative test suite? enhancement
#43 opened Jun 12, 2020 by endrebak
Find a way to ensure alignment of two interval tables. enhancement
#37 opened May 18, 2020 by golobor
5
Make function coverage_track() to create base-pair resolution coverage tracks enhancement
#36 opened May 18, 2020 by golobor
1
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