Add citation file

openCONTRABASS · Oct 14, 2023 · 28897c6 · 28897c6
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diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -6,6 +6,7 @@ on:
       - main
     tags:
       - '*'
+
 jobs:
  test:
     runs-on: ubuntu-latest

diff --git a/.readthedocs.yml b/.readthedocs.yml
diff --git a/CITATION.cff b/CITATION.cff
@@ -0,0 +1,34 @@
+cff-version: 1.2.0
+message: "If you use this software, please cite it as below."
+authors:
+- family-names: "Oarga"
+  given-names: "Alexandru"
+- family-names: "Bannerman"
+  given-names: "Bridget P"
+- family-names: "Júlvez"
+  given-names: "Jorge"
+title: "CONTRABASS: exploiting flux constraints in genome-scale models for the detection of vulnerabilities"
+version: 0.2.1
+doi: 10.1093/bioinformatics/btad053
+date-released: 2023-02-02
+url: "https://doi.org/10.1093/bioinformatics/btad053"
+preferred-citation:
+  type: article
+  authors:
+  - family-names: "Oarga"
+    given-names: "Alexandru"
+  - family-names: "Bannerman"
+    given-names: "Bridget P"
+  - family-names: "Júlvez"
+    given-names: "Jorge"
+  doi: "10.1093/bioinformatics/btad053"
+  journal: "Bioinformatics"
+  month: 2
+  start: "btad053"
+  end: "btad053"
+  title: "CONTRABASS: exploiting flux constraints in genome-scale models for the detection of vulnerabilities"
+  issue: 2
+  volume: 39
+  year: 2023
+  publisher: "Oxford University Press"
+
diff --git a/docs/requirements.txt b/docs/requirements.txt
diff --git a/requirements.txt b/requirements.txt
@@ -8,6 +8,7 @@ mpmath
 numpy>=1.16.5
 optlang>=1.4.2
 pandas>=0.17.0
+pipdeptree==0.13.1
 python-dateutil
 python-libsbml
 python-libsbml-experimental==5.18.0

diff --git a/test/requirements.txt b/test/requirements.txt
@@ -8,7 +8,7 @@ mpmath
 numpy>=1.16.5
 optlang>=1.4.2
 pandas>=0.17.0
-pipdeptree
+pipdeptree==0.13.1
 python-dateutil
 python-libsbml
 python-libsbml-experimental==5.18.0