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openproblems-bio / task_perturbation_prediction Public

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add sc data preprocessing (#77) #2

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add sc data preprocessing (#77)

add sc data preprocessing (#77) #2

Summary
Jobs
- Build target branch
  
  Build (mean_rowwise_error, metrics, executable, docker, src/metrics/mean_rowwise_error/config.vsh...
  
  Build (mean_rowwise_correlation, metrics, executable, docker, src/metrics/mean_rowwise_correlatio...
  
  Build (ground_truth, control_methods, executable, docker, src/control_methods/ground_truth/config...
  
  Build (mean_across_celltypes, control_methods, executable, docker, src/control_methods/mean_acros...
  
  Build (mean_outcome, control_methods, executable, docker, src/control_methods/mean_outcome/config...
  
  Build (sample, control_methods, executable, docker, src/control_methods/sample/config.vsh.yaml, t...
  
  Build (mean_across_compounds, control_methods, executable, docker, src/control_methods/mean_acros...
  
  Build (zeros, control_methods, executable, docker, src/control_methods/zeros/config.vsh.yaml, tar...
  
  Build (jn_ap_op2, methods, executable, docker|native, src/methods/jn_ap_op2/config.vsh.yaml, targ...
  
  Build (lgc_ensemble_train, methods, executable, docker|native, src/methods/lgc_ensemble_train/con...
  
  Build (transformer_ensemble, methods, executable, docker, src/methods/transformer_ensemble/config...
  
  Build (pyboost, methods, executable, docker|native, src/methods/pyboost/config.vsh.yaml, target/e...
  
  Build (lgc_ensemble_prepare, methods, executable, docker|native, src/methods/lgc_ensemble_prepare...
  
  Build (nn_retraining_with_pseudolabels, methods, executable, docker|native, src/methods/nn_retrai...
  
  Build (lgc_ensemble_direct, methods, executable, docker|native, src/methods/lgc_ensemble_direct/c...
  
  Build (scape, methods, executable, docker, src/methods/scape/config.vsh.yaml, target/executable/m...
  
  Build (lgc_ensemble_predict, methods, executable, docker|native, src/methods/lgc_ensemble_predict...
  
  Build (add_uns_metadata, process_dataset, executable, docker, src/process_dataset/add_uns_metadat...
  
  Build (run_limma, process_dataset, executable, docker, src/process_dataset/run_limma/config.vsh.y...
  
  Build (filter_obs, process_dataset, executable, docker, src/process_dataset/filter_obs/config.vsh...
  
  Build (split_sc, process_dataset, executable, docker, src/process_dataset/split_sc/config.vsh.yam...
  
  Build (compute_pseudobulk, process_dataset, executable, docker, src/process_dataset/compute_pseud...
  
  Build (filter_vars, process_dataset, executable, docker, src/process_dataset/filter_vars/config.v...
  
  Build (convert_h5ad_to_parquet, process_dataset, executable, docker, src/process_dataset/convert_...
  
  Build (bootstrap, process_dataset, executable, docker, src/process_dataset/bootstrap/config.vsh.y...
  
  Build (generate_id_map, process_dataset, executable, docker, src/process_dataset/generate_id_map/...
  
  Build (convert_kaggle_h5ad_to_parquet, process_dataset, executable, docker, src/process_dataset/c...
Run details
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build / Build (convert_kaggle_h5ad_to_parquet, process_dataset, executable, docker, src/process_dataset/c...

build / Build (convert_kaggle_h5ad_to_parquet, process_dataset, executable, docker, src/process_dataset/c...

succeeded Oct 30, 2024 in 2m 21s

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