fixed, working now when ran as a script, not as part of viash

scripts/add_a_method.sh

@@ -8,7 +8,7 @@ exit 1
 scripts/download_resources.sh
 
 # create a new component
-method_id="third_place"
+method_id="my_method"
 method_lang="python" # change this to "r" if need be
 
 viash run src/common/create_component/config.vsh.yaml -- \

src/task/methods/third_place/config.vsh.yaml

@@ -1,69 +1,30 @@
-# The API specifies which type of component this is.
-# It contains specifications for:
-#   - The input/output files
-#   - Common parameters
-#   - A unit test
 __merge__: ../../api/comp_method.yaml
 
 functionality:
-  # A unique identifier for your component (required).
-  # Can contain only lowercase letters or underscores.
   name: third_place
-
-  # Metadata for your component
   info:
-    # A relatively short label, used when rendering visualisations (required)
     label: Third Place
-    # A one sentence summary of how this method works (required). Used when 
-    # rendering summary tables.
     summary: "FILL IN: A one sentence summary of this method."
-    # A multi-line description of how this component works (required). Used
-    # when rendering reference documentation.
     description: |
       FILL IN: A (multi-line) description of how this method works.
-    # Which normalisation method this component prefers to use (required).
     preferred_normalization: log_cp10k
-    # A reference key from the bibtex library at src/common/library.bib (required).
     reference: bibtex_reference_key
-    # URL to the documentation for this method (required).
     documentation_url: https://url.to/the/documentation
-    # URL to the code repository for this method (required).
     repository_url: https://github.com/organisation/repository
 
-  # Component-specific parameters (optional)
-  # arguments:
-  #   - name: "--n_neighbors"
-  #     type: "integer"
-  #     default: 5
-  #     description: Number of neighbors to use.
-
-  # Resources required to run the component
   resources:
-    # The script of your component (required)
     - type: python_script
       path: script.py
-    - path: single_cell_perturbations/util.py
-    - path: single_cell_perturbations/models.py
-    - path: single_cell_perturbations/config/params_stage_1.py
-    - path: single_cell_perturbations/config/params_stage_2.py
-    - path: single_cell_perturbations/models/simple/model_7/model_7_0.keras
-    # Additional resources your script needs (optional)
-    # - type: file
-    #   path: weights.pt
+    - path: submission(14).csv
 
 platforms:
-  # Specifications for the Docker image for this component.
   - type: docker
     image: ghcr.io/openproblems-bio/base_python:1.0.4
-    # Add custom dependencies here (optional). For more information, see
-    # https://viash.io/reference/config/platforms/docker/#setup .
     setup:
       - type: python
         packages: [ tensorflow==2.12.0, numpy==1.23.5, pandas==2.0.3, matplotlib==3.7.2, scikit-learn==1.3.2, pyarrow==13.0.0, fastparquet ]
 
-  # This platform allows running the component natively
   - type: native
-  # Allows turning the component into a Nextflow module / pipeline.
   - type: nextflow
     directives:
       label: [midtime,midmem,midcpu]