override output filenames

openproblems-bio · Jun 3, 2024 · ee60cc5 · ee60cc5
1 parent d235d51
commit ee60cc5
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diff --git a/scripts/run_stability_tw.sh b/scripts/run_stability_tw.sh
@@ -6,6 +6,8 @@ publish_dir="s3://openproblems-data/resources/dge_perturbation_prediction/result
 cat > /tmp/params.yaml << HERE
 id: neurips-2023-data
 sc_counts: s3://openproblems-bio/public/neurips-2023-competition/sc_counts_reannotated_with_counts.h5ad
+scores: stability_uns.yaml
+output_state: "state.yaml"
 publish_dir: "$publish_dir"
 HERE
 

diff --git a/src/task/workflows/run_stability_analysis/config.vsh.yaml b/src/task/workflows/run_stability_analysis/config.vsh.yaml
@@ -55,7 +55,7 @@ functionality:
           required: true
           direction: output
           description: A yaml file containing the scores of each of the methods
-          default: score_uns.yaml
+          default: stability_uns.yaml
     - name: Arguments
       arguments:
         - name: "--method_ids"