Initial jupyterlab updates

.github/workflows/docker-image.yml

@@ -2,9 +2,9 @@ name: Docker Image Build & Run
 
 on:
   push:
-    branches: [ master, dev*, test* ]
+    branches: [ master, dev*, experimental, test* ]
   pull_request:
-    branches: [ master, dev*, test* ]
+    branches: [ master, dev*, experimental, test* ]
 
 jobs:
 

Dockerfile

@@ -53,7 +53,7 @@ RUN  sudo update-alternatives --install /usr/bin/pip pip /usr/bin/pip3 10
 ################################################################################
 ########     Install NEURON simulator
 
-RUN pip3 install neuron==8.0.1
+RUN sudo pip3 install neuron==8.1.0
 
 
 ################################################################################
@@ -123,3 +123,5 @@ RUN echo '\n\nalias cd..="cd .."\nalias h=history\nalias ll="ls -alt"' >> ~/.bas
 RUN pip list
 
 RUN echo "Built the OpenWorm Docker image!"
+
+RUN python3 -m pip install --no-cache-dir notebook jupyterlab

build.sh

@@ -1,4 +1,14 @@
 #!/bin/bash
 
 version=$(<VERSION) # Read version of Dockerfile from file VERSION
-docker build "$@" -t "openworm/openworm:$version" .
+
+# Set the platform flag if we're on ARM
+arch=$(uname -m)
+if [[ "$arch" == "arm64" || "$arch" == "aarch64" ]]; then
+    platform_flag="--platform linux/amd64"
+else
+    platform_flag=""
+fi
+
+# Build the Docker image
+docker build $platform_flag "$@" -t "openworm/openworm:$version" .

rebuild.sh

@@ -1,4 +1,14 @@
 #!/bin/bash
 
 version=$(<VERSION) # Read version of Dockerfile from file VERSION
-docker build "$@" -t "openworm/openworm:$version"  --no-cache .
+
+# Set the platform flag if we're on ARM
+arch=$(uname -m)
+if [[ "$arch" == "arm64" || "$arch" == "aarch64" ]]; then
+    platform_flag="--platform linux/amd64"
+else
+    platform_flag=""
+fi
+
+# Rebuild the Docker image
+docker build $platform_flag "$@" -t "openworm/openworm:$version"  --no-cache .

run-jl.sh

@@ -0,0 +1,5 @@
+#!/bin/bash
+
+version=$(<VERSION) # Read version of Dockerfile from file VERSION
+
+docker run -it --rm -p 8888:8888 "openworm/openworm:$version" jupyter lab --NotebookApp.default_url=/lab/ --ip=0.0.0.0 --port=8888 --allow-root