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17 Open 21 Closed
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Issues list

SciUnit test to reproduce additional muscle patch clamp data in the muscle model
#64 opened Feb 19, 2017 by slarson
@rgerkin
7
Add to the readme to create a well cited and reasoned case for the ideal set of ion channels that should be in the muscle model
#63 opened Feb 14, 2017 by slarson
@slarson @gsarma
@lungd @VahidGh
8
Create tests to catch performance regressions in specific functions testing
#51 opened Aug 9, 2015 by gsarma Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model
Check for performance regressions in testing suite testing
#50 opened Aug 9, 2015 by gsarma Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model
1
Integrate the test in the test suite being run on TravisCI testing
#44 opened Jun 21, 2015 by travs Create unit test on the full muscle model that reproduces Figure 1A from Liu, Hollopeter, & Jorgensen 2009
Turn the error-generating script into a SciUnit test sciunit testing
#43 opened Jun 21, 2015 by travs Create unit test on the full muscle model that reproduces Figure 1A from Liu, Hollopeter, & Jorgensen 2009
Write a script that generates an overlaid image of the simulated and digitized data
#42 opened Jun 21, 2015 by travs Create unit test on the full muscle model that reproduces Figure 1A from Liu, Hollopeter, & Jorgensen 2009
1
Write a script that takes the digitized figure and the simulation output and calculates the error/difference
#41 opened Jun 21, 2015 by travs Create unit test on the full muscle model that reproduces Figure 1A from Liu, Hollopeter, & Jorgensen 2009
Document muscle_model testing framework testing
#39 opened Jun 21, 2015 by travs Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model
Write SciUnit validation tests for muscle_model sciunit testing
#38 opened Jun 21, 2015 by travs
6 tasks
Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model
@rgerkin
10
Write doctests for muscle_model ready
#36 opened Jun 21, 2015 by travs
2 tasks
Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model
@cheelee
16
Draft workflow outline for validation tests sciunit testing
#33 opened May 7, 2015 by travs Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model
Improve Geppetto version of muscle model enhancement
#32 opened Feb 8, 2015 by slarson
3
Define parameters for simulated experiment using jNeuroML on the command line, based on the methods that went into the figure enhancement in progress
#31 opened Jan 18, 2015 by slarson Create unit test on the full muscle model that reproduces Figure 1A from Liu, Hollopeter, & Jorgensen 2009
@rayner
19
Create unit test that verifies correct I/V curve for ca_boyle NML2 channel enhancement sciunit testing
#30 opened Jan 18, 2015 by slarson Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model
@slarson
13
Print out values from python / matlab implementations and compare with values from NeuroML2 enhancement
#28 opened Jan 18, 2015 by slarson
8
Update README.md with new sections
#15 opened Nov 27, 2014 by slarson
1 of 9 tasks
@slarson
7
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