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    16 repositories

    • micropipe

      Public
      A pipeline for high-quality bacterial genome construction using ONT sequencing
      bioinformatics-pipelinemicrobial-genomicsoxford-nanoporegenome-assemblylong-read-sequencingnanopore-analysis-pipeline
      HTML
      •
      GNU General Public License v3.0
      •9•38•1•0•Updated Sep 22, 2022Sep 22, 2022

    • CREATEQ_CPE

      Public
      Assemblies for CREATE-Q CPE manuscript
      0•0•0•0•Updated Nov 2, 2019Nov 2, 2019

    • DiscoPlot

      Public
      Visualising discordant reads
      Python
      •
      GNU General Public License v3.0
      •4•2•0•2•Updated Mar 5, 2018Mar 5, 2018

    • ST131_200_Rscripts

      Public
      R scripts for ST131_200 study
      R
      •1•2•0•0•Updated Apr 1, 2016Apr 1, 2016

    • BeatsonLab-MicrobialGenomics.github.io

      Public
      Lab Website
      HTML
      •9•5•1•0•Updated Oct 8, 2015Oct 8, 2015

    • Contiguity

      Public
      Tool for visualising assemblies.
      Python
      •
      GNU General Public License v3.0
      •2•1•0•1•Updated Sep 15, 2015Sep 15, 2015

    • ST131_99

      Public
      Data for - Global dissemination of a multidrug resistant Escherichia coli clone
      2•3•0•0•Updated Mar 25, 2015Mar 25, 2015

    • SeqFindR

      Public
      [MIRROR] A tool to easily create informative genomic feature plots
      Python
      •
      Other
      •1•8•2•0•Updated Dec 7, 2014Dec 7, 2014

    • Plasmid-barcodes

      Public
      Generate barcode like images representing unique plasmid element hits from you NGS data
      0•0•0•0•Updated Jun 25, 2014Jun 25, 2014

    • SeqFindr-D3.js

      Public
      Generate dynamic SeqFindr plots using D3.js library
      JavaScript
      •0•1•0•0•Updated Jun 25, 2014Jun 25, 2014

    • Prepublication-data-statement

      Public
      Beatson Lab Prepublication data statement
      0•0•0•0•Updated Jun 1, 2014Jun 1, 2014

    • VFDB

      Public
      [MIRROR] Virulence factors, other sequences of interest & Islands. For ST131 99 manuscript. SeqFindR formatted
      Python
      •1•0•0•0•Updated May 14, 2014May 14, 2014

    • samplemod

      Public
      Beatson Group sample/base python project. This simple project is an example repo/bootstrap repo for python projects
      Python
      •
      Other
      •1•0•1•0•Updated Apr 1, 2014Apr 1, 2014

    • TraDIS-Web-Portal

      Public
      TraDIS data web portal
      Ruby
      •
      Other
      •0•0•1•0•Updated Mar 28, 2014Mar 28, 2014

    • samplescript

      Public
      Beatson Group sample/base python script
      0•0•0•0•Updated Jul 18, 2013Jul 18, 2013

    • core-scripts

      Public
      Core/generic bioinformatics scripts. Contains submodule links to all smaller script packages within the Beatson Microbial Genomics group
      0•2•0•0•Updated Jun 28, 2013Jun 28, 2013