Repositories list

• biodepot-launcher

  Public
  JavaScript

  •

  MIT License

  •0•1•0•0•Updated Sep 11, 2024Sep 11, 2024

• GDC_Genomic_Workflows

  Public
  C

  •

  MIT License

  •0•1•0•0•Updated Mar 13, 2024Mar 13, 2024

• workflows-gitpod

  Public
  Python

  •0•0•0•0•Updated Jan 31, 2024Jan 31, 2024

• BioDepot-workflow-builder

  Public
  💻 GUI for creating bioinformatics workflows from 🐳 Docker containers:

  Python

  •

  Other

  •19•64•4•1•Updated Jan 30, 2024Jan 30, 2024

• workflows

  Public
  C

  •

  Other

  •0•0•0•0•Updated Nov 30, 2023Nov 30, 2023

• nanopore-gpu

  Public
  Python

  •

  Other

  •1•5•0•0•Updated Sep 19, 2023Sep 19, 2023

• aws-s3-explorer

  Public
  Customized version of aws-s3-explorer

  JavaScript

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 7, 2023Apr 7, 2023

• MorphicConsortiumWebSite

  Public
  https://elijah1368.github.io/MorphicConsortium/

  CSS

  •2•1•0•0•Updated Dec 16, 2022Dec 16, 2022

• fiji-clij

  Public
  Fiji with GPU functionality

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•2•0•0•Updated Oct 15, 2022Oct 15, 2022

• fiji-demo

  Public
  Python

  •0•3•0•0•Updated Sep 2, 2022Sep 2, 2022

• LINCS_RNAseq_cpp

  Public
  Optimized tools for barcoded RNA-seq

  C

  •

  MIT License

  •2•2•0•0•Updated Aug 11, 2021Aug 11, 2021

• kallisto-sam

  Public
  Modified kallisto that outputs sam lines to stdout instead of tsv and pseudobam files

  C

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated Jul 14, 2021Jul 14, 2021

• serverless-UMI

  Public
  C++

  •

  Other

  •1•0•0•1•Updated Jun 4, 2021Jun 4, 2021

• Workflow-repository

  Public
  A collection of containerized workflows for the BioDepot-Workflow-Builder

  C

  •0•0•0•0•Updated Oct 19, 2019Oct 19, 2019

• nbdocker

  Public
  A Jupyter Notebook extension for Docker

  JavaScript

  •5•15•0•0•Updated Sep 2, 2019Sep 2, 2019

• smith-waterman-serverless

  Public
  Serverless implementation of Smith-Waterman on all-vs-all human protein set

  0•0•0•0•Updated Jun 24, 2019Jun 24, 2019

• RNA-seq-lambda

  Public
  Rapid RNA-seq pipeline using AWS lambda functions for alignment

  Python

  •2•13•0•0•Updated Mar 22, 2019Mar 22, 2019

• LINCS_RNAseq_cpp_old

  Public
  Optimized software for barcoded Unique Molecular Identifier (UMI) RNAseq

  C++

  •

  MIT License

  •0•1•0•0•Updated Mar 17, 2019Mar 17, 2019

• TaskPerform_AWSLambda

  Public
  Computational tasks performance in parallel using AWS Lambda and example

  Python

  •1•5•0•0•Updated Aug 2, 2018Aug 2, 2018

• star

  Public
  Star aligner container with wrapper for quantification

  0•0•0•0•Updated Jul 30, 2018Jul 30, 2018

• dtoxs_analysis

  Public
  Docker image for Differential Expression Analysis on DToxS Data

  R

  •0•0•0•0•Updated Jul 29, 2018Jul 29, 2018

• sratoolkit

  Public
  Docker image for sratoolkit

  Perl

  •0•0•0•0•Updated Jul 28, 2018Jul 28, 2018

• downloadURL-bwbWidgetImage

  Public
  Docker image for Bwb downloadURL widget

  Shell

  •0•0•0•0•Updated Jul 28, 2018Jul 28, 2018

• Hotstarting-For-STAR-Alignment

  Public
  A hot-starting method for STAR Alignment.

  Shell

  •1•1•0•0•Updated May 19, 2018May 19, 2018

• L1kpp

  Public
  Faster more accurate processing of LINCS L1000 data

  HTML

  •

  MIT License

  •0•0•0•0•Updated May 1, 2018May 1, 2018

• ubuntu-star

  Public
  Minimal Ubuntu container with STAR aligner

  Shell

  •0•2•0•0•Updated Oct 18, 2017Oct 18, 2017

• GUIdock-VNC

  Public
  JavaScript

  •

  MIT License

  •7•12•2•0•Updated Jun 22, 2017Jun 22, 2017

• dtoxs_alignment

  Public
  R

  •0•0•0•0•Updated Jun 6, 2017Jun 6, 2017

• DREAM9.5

  Public
  Predicting Discontinuation of Docetaxel Treatment for Metastatic Castration-Resistant Prostate Cancer (mCRPC)

  R

  •

  MIT License

  •2•0•0•0•Updated Mar 6, 2017Mar 6, 2017

• GUIdock-X11

  Public
  Graphical GUI for Docker (Bioconductor, R, Cytoscape, NetworkBMA)

  Shell

  •

  MIT License

  •8•5•0•0•Updated Feb 13, 2017Feb 13, 2017