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@CNIC-Proteomics Proteomics at the Spanish National Center of Cardiovascular Research

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    56 repositories

    • ReFrag

      Public
      Recom rebuilt for MSFragger
      Python
      •
      Other
      •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

    • next-Launcher

      Public
      next-Laucher is a system that execute Nextflow pipelines: backend and frontend systems
      Dockerfile
      •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

    • nextflow-api

      Public
      Nextflow-API is a web application and REST API for submitting and monitoring Nextflow pipelines on a variety of execution environments.
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

    • next-Launcher-app

      Public
      Web application for the next-Launcher system
      CSS
      •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

    • pyVseq

      Public
      Vseq rebuilt in Python
      Python
      •
      Other
      •1•0•0•0•Updated Nov 28, 2024Nov 28, 2024

    • PTM-compass

      Public
      PTM-compass workflow
      Python
      •
      Other
      •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • nf-PTM-compass

      Public
      nf-PTM-compass is a Nextflow pipeline that enhances the identification and quantification of Post-Translational Modifications (PTMs).
      Groovy
      •
      Other
      •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • nf-SearchEngine

      Public
      nf-SearchEngine is a Nextflow pipeline that execute the MSFragger search engine for the peptide identification.
      Groovy
      •
      Other
      •0•1•0•0•Updated Nov 27, 2024Nov 27, 2024

    • TurboPutative-web

      Public
      metabolomicslc-msdata-processinguntargeted-metabolomics
      HTML
      •
      Other
      •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • nf-modules

      Public
      Modules for nextflow pipelines
      Nextflow
      •0•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • iSanXoT

      Public
      Stand-alone application that executes workflows for quantitative high-throughput proteomics, systems biology and the statistical analysis, integration and comparison of experiments, based on SanXoT integrations.
      workflowproteomics
      Python
      •
      Other
      •1•2•0•1•Updated Nov 15, 2024Nov 15, 2024

    • TrackHubs

      Public
      Python
      •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

    • SearchToolkit

      Public
      Python
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • Solvers-PTMap

      Public
      Python
      •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • SHIFTS

      Public
      SHIFTS is a battery of programs for high-throughput PTM (Post Translational Modifications) processing. SHIFTS identifies peaks in the Delta Mass distribution, assigns PSMs to peaks, and calculates FDR for peptide identification.
      Python
      •3•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • TurboOmics

      Public
      Web-based platform for multi-omics analysis of metabolomics data implemented in TurboPutative
      JavaScript
      •
      Other
      •1•1•0•0•Updated Oct 31, 2024Oct 31, 2024

    • ReportAnalysis

      Public
      Scripts for Report Analysis
      JavaScript
      •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • fetchCMM

      Public
      JavaScript
      •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • bioDataHub

      Public
      Scripts that create databases used by iSanXoT
      Python
      •0•0•0•0•Updated Sep 12, 2024Sep 12, 2024

    • SANPRO

      Public
      The programs for the iSanXoT results
      Python
      •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

    • nf-SHIFTS

      Public
      Nextflow for SHIFTS pipeline
      Groovy
      •0•0•0•0•Updated May 10, 2024May 10, 2024

    • nf-PTM-Solver

      Public
      Nextflow for SOLVER pipeline
      Groovy
      •0•0•0•0•Updated Apr 11, 2024Apr 11, 2024

    • quantMS-PTM

      Public
      Quantitative Mass Spectrometry and Post-Translational Modifications Analysis Workflow
      Python
      •0•0•0•0•Updated Apr 3, 2024Apr 3, 2024

    • Multiomics-pipeline

      Public
      Set of Jupyter Notebooks, scripts and libraries to perform the multiomics integration.
      Jupyter Notebook
      •0•0•0•0•Updated Nov 14, 2023Nov 14, 2023

    • sanREST

      Public
      A RESTful API that describes the web services and the operations for the report files of iSanXoT.
      CSS
      •0•0•0•0•Updated Oct 31, 2023Oct 31, 2023

    • TurboPutative-2

      Public
      C++
      •
      Other
      •0•0•0•0•Updated Oct 11, 2023Oct 11, 2023

    • DBCleaner

      Public
      Python
      •0•0•0•0•Updated Dec 12, 2022Dec 12, 2022

    • ReCom

      Public
      Branch of Comet MS/MS
      C
      •
      Apache License 2.0
      •1•0•0•0•Updated Dec 1, 2022Dec 1, 2022

    • MiCoDIS

      Public
      JavaScript
      •0•0•0•0•Updated Sep 9, 2022Sep 9, 2022

    • PAnTeomics

      Public
      Peptidoform Annotation Tool for proteomic analysis
      Python
      •0•0•0•0•Updated Jul 20, 2022Jul 20, 2022