Repositories list

• CenikLab.github.io

  Public
  HTML

  •

  MIT License

  •2•1•0•4•Updated Nov 18, 2024Nov 18, 2024

• TE_model

  Public
  Python

  •0•0•1•0•Updated Oct 26, 2024Oct 26, 2024

• consistency_Ribo-seq

  Public
  Python

  •0•0•0•0•Updated Jan 30, 2024Jan 30, 2024

• satmut_utils

  Public
  Simulation and variant calling in paired-end, targeted RNA-seq saturation mutagenesis data.

  Python

  •

  GNU General Public License v3.0

  •1•2•1•0•Updated Dec 25, 2023Dec 25, 2023

• non_readable_ranges

  Public
  A collection of scripts to find duplicate and therefore non-readable ranges in a transcriptome

  Jupyter Notebook

  •0•0•0•0•Updated Sep 23, 2023Sep 23, 2023

• ribo-itp_paper

  Public
  Scripts and references used for the Ribo-ITP paper

  Jupyter Notebook

  •0•1•0•0•Updated Jun 29, 2023Jun 29, 2023

• satmut_utils_supplementary

  Public
  Supplementary files for satmut_utils secondary analysis

  1•0•0•0•Updated Dec 5, 2022Dec 5, 2022

• satmut_utils_refs

  Public
  Curated references files for use with satmut_utils

  1•0•0•0•Updated Apr 7, 2022Apr 7, 2022

• plot_examples

  Public
  Examples of plots for publications

  HTML

  •0•0•0•0•Updated Nov 19, 2021Nov 19, 2021

• ribo-itp_paper_references

  Public
  Reference files of the human and mouse transcriptomes for the Ribo-ITP paper

  Jupyter Notebook

  •0•1•0•0•Updated Oct 21, 2021Oct 21, 2021

• sars-cov2_NSP1_protein

  Public
  Supplementary files of our sars-cov2 NSP1 protein manuscript

  Jupyter Notebook

  •1•0•0•0•Updated Jun 7, 2021Jun 7, 2021

• TACC-Examples

  Public
  1•1•0•1•Updated Jan 3, 2021Jan 3, 2021