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37 repositories

siibra-python
Public
Software interfaces for interacting with brain atlases - Python client
neuroscience brain atlas humanbrainproject bigbrain bigbrainproject
Python
•
Apache License 2.0
•10•48•63•13•Updated Dec 11, 2024Dec 11, 2024
siibra-api
Public
Python
•
Apache License 2.0
•3•4•6•0•Updated Dec 11, 2024Dec 11, 2024
voluba
Public
Browser based tool for interactive alignment of high-resolution volumes of interest to 3D reference brain models
Vue
•
Apache License 2.0
•0•4•31•3•Updated Dec 11, 2024Dec 11, 2024
siibra-explorer
Public
TypeScript
•
Apache License 2.0
•4•22•45•8•Updated Dec 9, 2024Dec 9, 2024
celldetection
Public
Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
deep-learning pytorch object-detection unet semantic-segmentation cell-segmentation cpn instance-segmentation mask-rcnn cell-detection
Python
•
Apache License 2.0
•21•126•14•0•Updated Dec 6, 2024Dec 6, 2024
cl-3d
Public
Contrastive learning using 3D context of stacked brain sections.
Python
•
Apache License 2.0
•0•0•0•0•Updated Nov 27, 2024Nov 27, 2024
siibra-configurations
Public
Python
•1•1•28•5•Updated Nov 18, 2024Nov 18, 2024
siibra-jugex
Public
Differential analysis of gene expressions in human brain regions
Python
•
Apache License 2.0
•1•0•2•2•Updated Nov 11, 2024Nov 11, 2024
siibra-tutorials
Public
Tutorials for the siibra toolsuite - software interface for brain atlases.
Jupyter Notebook
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Apache License 2.0
•1•9•1•1•Updated Nov 8, 2024Nov 8, 2024
siibra-schema
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Oct 30, 2024Oct 30, 2024
iav-dep-test
Public
Python
•0•0•0•0•Updated Oct 28, 2024Oct 28, 2024
siibralab
Public
Matlab interface to the siibra toolsuite
MATLAB
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Apache License 2.0
•2•5•6•4•Updated Oct 6, 2024Oct 6, 2024
siibra-compose
Public
Python
•
MIT License
•0•1•0•0•Updated Jul 15, 2024Jul 15, 2024
celldetection-napari
Public
Python
•
Apache License 2.0
•1•4•1•0•Updated Jul 10, 2024Jul 10, 2024
HAICon2024-satellite-events
Public
0•2•11•0•Updated Jan 18, 2024Jan 18, 2024
siibra-cli
Public
Command line interface for siibra
Python
•
Apache License 2.0
•0•0•0•0•Updated Jan 8, 2024Jan 8, 2024
hbp-fluentd-logger
Public archive
JavaScript
•0•0•0•0•Updated Dec 1, 2023Dec 1, 2023
pytiff
Public
Cython
•
Other
•13•11•7•0•Updated Nov 28, 2023Nov 28, 2023
voluba-mriwarp
Public
Integrate whole brain T1-weighted MRI scans into the anatomical context of the Julich Brain Atlas. Find the developer documentation at https://voluba-mriwarp.readthedocs.io/en/developer_documentation/.
Python
•
Apache License 2.0
•0•1•13•0•Updated Nov 14, 2023Nov 14, 2023
neurips22-cell-seg
Public
Python
•
Apache License 2.0
•0•7•0•0•Updated Aug 1, 2023Aug 1, 2023
HIBALL-Hackathon-2023
Public
0•1•8•0•Updated May 26, 2023May 26, 2023
ebrains_fluentd
Public
Dockerfile
•
MIT License
•0•0•0•0•Updated May 3, 2023May 3, 2023
HBP-connectivity-component
Public
TypeScript
•
MIT License
•0•1•3•0•Updated Apr 12, 2023Apr 12, 2023
webjugex-dependency-tests
Public archive
JavaScript
•0•0•0•5•Updated Mar 4, 2023Mar 4, 2023
ngx-monaco-editor-v2
Public
Monaco Editor component for Angular 2 and Above
TypeScript
•
MIT License
•156•0•0•0•Updated Jan 17, 2023Jan 17, 2023
iav-plugin-tvb-parameter-visualiser
Public archive
Svelte
•
MIT License
•0•0•0•5•Updated Dec 8, 2022Dec 8, 2022
siibra-toolbox-neuroimaging
Public
siibra toolbox for assignment of neuroimaging signals to brain regions
Python
•
Apache License 2.0
•0•0•4•0•Updated Sep 8, 2022Sep 8, 2022
kg-dataset-previewer
Public archive
TypeScript
•
MIT License
•1•1•1•0•Updated Mar 8, 2022Mar 8, 2022
webjugex-iav-plugin
Public archive
Vue
•0•1•6•0•Updated Feb 7, 2022Feb 7, 2022
microdraw
Public
Collaborative vectorial annotation tool for ultra high resolution data.
JavaScript
•
GNU General Public License v3.0
•41•0•0•0•Updated Dec 17, 2021Dec 17, 2021