MoTrPAC

All

25 repositories

motrpac-frontend
Public
User interface and Frontend for MoTrPAC Bioinformatics Center
JavaScript
•
MIT License
•0•3•47•5•Updated Dec 20, 2024Dec 20, 2024
MotrpacBicQC
Public
R package for the MoTrPAC community
proteomics metabolomics qc motrpac r-package
R
•
MIT License
•4•8•9•0•Updated Dec 14, 2024Dec 14, 2024
motrpac-atac-seq-pipeline
Public
MoTrPAC implementation of the ENCODE ATAC-seq pipeline
Shell
•0•3•0•1•Updated Dec 9, 2024Dec 9, 2024
motrpac-workshops
Public
Workshops about MoTrPAC data and tools
HTML
•
MIT License
•0•0•1•0•Updated Nov 22, 2024Nov 22, 2024
MotrpacRatTraining6moData
Public
Data for analysis of the MoTrPAC endurance exercise training study in 6-month-old rats
data molecular-biology multi-omics-data r
R
•
MIT License
•0•12•0•0•Updated Oct 31, 2024Oct 31, 2024
motrpac-rna-seq-pipeline
Public
WDL implementation of harmonized RNA-seq pipeline for MoTrPAC project
Python
•2•7•4•1•Updated Oct 10, 2024Oct 10, 2024
MotrpacRatTraining6mo
Public
Analysis of the MoTrPAC endurance exercise training study in 6-month-old rats
r data-visualization data-analysis multi-omics
R
•
MIT License
•0•8•0•0•Updated Sep 30, 2024Sep 30, 2024
exercise-transcriptome-meta-analysis
Public
A React frontend (for those who are interested in the transcriptomic changes in response to endurance and resistance exercise or training in human blood or skeletal muscle) to query the results from a meta-analysis of publicly available transcriptomes.
JavaScript
•0•0•6•0•Updated Sep 17, 2024Sep 17, 2024
motrpac-proteomics-pipeline
Public
MoTrPAC cloud-based proteomics data analysis pipeline
Python
•0•1•3•0•Updated Aug 12, 2024Aug 12, 2024
motrpac-rrbs-pipeline
Public
Pipeline for analysis of RRBS data, currently being based of MSSM pipeline
WDL
•0•2•0•1•Updated Aug 10, 2024Aug 10, 2024
motrpac-backend-utils
Public
Python package to unify utilities used by different backend services in the MoTrPAC Bioinformatics Center
python utilities queue multiprocessing google-cloud zipfile backend-service
Python
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Other
•0•1•1•0•Updated Jun 19, 2024Jun 19, 2024
MotrpacRatTraining6moWATData
Public
Data and analysis results for the MoTrPAC PASS1B rat white adipose tissue manuscript
data r exercise rat r-package adipose-tissue multi-omics rattus-norvegicus motrpac
R
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Other
•0•1•0•0•Updated May 1, 2024May 1, 2024
MotrpacRatTrainingPhysiologyData
Public
Data and analysis results for the MoTrPAC PASS1B rat physiology manuscript
exercise rat physiology motrpac
R
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Other
•0•0•0•0•Updated May 1, 2024May 1, 2024
motrpac_public_data_analysis
Public
training exercise gene moderators meta-analysis gene-data cohort-data
R
•2•4•0•0•Updated Apr 2, 2024Apr 2, 2024
MotrpacRatTraining6moWAT
Public
Helper Functions for the MotrpacRatTraining6moWATData R Package
r adipose-tissue motrpac
R
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Other
•0•2•1•0•Updated Mar 7, 2024Mar 7, 2024
.github
Public
0•0•0•0•Updated Dec 8, 2023Dec 8, 2023
motrpac-rat-training-mitochondria
Public
MoTrPAC rat training mitochondria companion.
HTML
•0•1•0•0•Updated Sep 27, 2023Sep 27, 2023
MotrpacRatTraining6moQCRep
Public
Post-quantification analyses of multi-omic multi-tissue data from the MoTrPAC endurance exercise training study in young adult rats
HTML
•0•0•1•0•Updated Apr 24, 2023Apr 24, 2023
motrpac-proteomics-pnnl-prototype
Public
Testing implementation of PNNL pipeline on BIC infrastructure
R
•2•2•0•1•Updated Mar 29, 2023Mar 29, 2023
clinical-sample-batching
Public
Batching script for clinical samples
R
•3•1•3•0•Updated Dec 14, 2022Dec 14, 2022
motrpac-tools
Public
Scripts and Tools useful for MoTrPAC
Python
•
MIT License
•1•3•0•0•Updated Sep 15, 2022Sep 15, 2022
motrpac.github.io
Public
HTML
•0•1•0•0•Updated Jan 30, 2020Jan 30, 2020
motrpac_candidate_starter
Public
A starter react application for programming exercise.
JavaScript
•
MIT License
•6•1•0•0•Updated Feb 1, 2019Feb 1, 2019
ORIG_motrpac.github.io
Public
HTML
•0•1•0•0•Updated Nov 1, 2018Nov 1, 2018
motrpac_metaanalysis
Public
R
•0•2•0•0•Updated Jun 14, 2018Jun 14, 2018