Repositories list

• knowledge_base

  Public
  A place for all knowledge regarding Research Data Management (RDM) in Chemistry

  knowledge-baserdmnfdi+ 1nfdi4chem

  JavaScript

  •27•11•5•0•Updated Oct 25, 2024Oct 25, 2024

• nmrxiv

  Public
  nmrXiv is currently developed as the FAIR, consensus-driven NMR data repository and computational platform. The ultimate goal is to accelerate broader coordination and data sharing among researchers by enabling storage, management, sharing and analysis of NMR data.

  nmrnmr-datanfdi4chem

  JavaScript

  •

  MIT License

  •4•14•86•6•Updated Oct 22, 2024Oct 22, 2024

• workshops

  Public
  NFDI4Chem is dedicated to the development of MIChI standards across various disciplines within the field of Chemistry. This website serves as a documentation hub for the proposed MIChIs and provides insights into the workshops conducted to refine and advance these standards.

  workshopsstandardsmichi

  JavaScript

  •

  MIT License

  •0•0•7•0•Updated Oct 21, 2024Oct 21, 2024

• cs-ms-converter

  Public
  The NFDI4Chem converter service is a REST API and Python server implementation to convert mass spectrometry data from various instrument vendors and converts into the open mzML format using proteowizard-msconvert . It also allows validation of the converted mzML file using the OpenMS FileInfo tool.

  mass-spectrometrymzml

  Python

  •

  MIT License

  •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

• cs-documentation

  Public
  The NFDI4Chem converter service is a REST API and Python server implementation to convert mass spectrometry data from various instrument vendors and converts into the open mzML format using proteowizard-msconvert . It also allows validation of the converted mzML file using the OpenMS FileInfo tool.

  mass-spectrometrymzml

  HTML

  •

  MIT License

  •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

• obook

  Public
  OBO Organized Knowledge: Training materials for becoming an OBO engineer

  Makefile

  •

  Creative Commons Zero v1.0 Universal

  •38•0•0•0•Updated Sep 27, 2024Sep 27, 2024

• rsc-cmo

  Public
  Chemical Methods Ontology

  Creative Commons Attribution 4.0 International

  •7•0•0•0•Updated Sep 27, 2024Sep 27, 2024

• nmrium-react-wrapper

  Public
  A wrapper around NMRium react component to enable seamless integration into third-party applications built on any modern framework.

  nmr-spectroscopynmr-tools

  TypeScript

  •

  MIT License

  •2•9•21•1•Updated Sep 25, 2024Sep 25, 2024

• MIChI

  Public
  Prototype for NFDI4Chem MIChI

  Python

  •

  GNU General Public License v3.0

  •1•1•0•1•Updated Sep 25, 2024Sep 25, 2024

• VibrationalSpectroscopyOntology

  Public
  WORK IN PROGRESS - The Vibration Spectroscopy Ontology defines technical terms with which research data produced in vibrational spectroscopy experiments can be semantically enriched, made machine readable and FAIR.

  raman-spectroscopyontology-development-kitnfdi4chem+ 2owlontology

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •7•7•18•4•Updated Sep 23, 2024Sep 23, 2024

• ConsortiumMeeting-5_0-abstracts

  Public
  Abstracts submitted for the NFDI4Chem Consortium Meeting 5.0 September 2024 in Halle

  JavaScript

  •2•0•0•0•Updated Sep 10, 2024Sep 10, 2024

• repo-helm-charts

  Public
  Packaging of nmrxiv and vibspecdb repository application for Kubernetes as Helm Charts.

  kuberneteschartshelm+ 1helm-charts

  Smarty

  •1•2•5•1•Updated Sep 1, 2024Sep 1, 2024

• workshop_maps

  Public
  Python

  •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

• nmr-platform

  Public
  PHP

  •0•2•1•0•Updated Jul 30, 2024Jul 30, 2024

• nmrkit

  Public
  A collection of powerful micro services designed to simplify your NMR data processing and analysis

  Python

  •

  MIT License

  •2•3•22•2•Updated Jun 7, 2024Jun 7, 2024

• nmrxiv-nodejs-microservice

  Public
  API Service To Process Spectra from various data formats to NMRium format.

  TypeScript

  •0•0•1•0•Updated Mar 21, 2024Mar 21, 2024

• oai4schemas

  Public
  This repo contains a XML schema that can embed JSON+LD (bio)schema metadata, crosswalks and examples. They are designed to work with https://radar.products.fiz-karlsruhe.de/en/radarfeatures/radar-oai-provider.

  Shell

  •

  Apache License 2.0

  •0•2•1•0•Updated Feb 13, 2024Feb 13, 2024

• rxno

  Public
  Name Reaction Ontology

  Creative Commons Attribution 4.0 International

  •12•0•7•0•Updated Nov 28, 2023Nov 28, 2023

• unit-ontology

  Public
  An ontology of units of measurements

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •12•0•0•0•Updated Nov 28, 2023Nov 28, 2023

• ontology-elements

  Public
  Ontology-Elements project aims at developing custom ontology rich html elements (web components). The primary benefit of custom html elements is that they can be used with any framework, or even without a framework. This makes them ideal for distributing components where the end consumer may not be using the same frontend stack

  webcomponentsontologiesfair-data

  Vue

  •

  MIT License

  •1•2•27•1•Updated Oct 12, 2023Oct 12, 2023

• nmrxiv-docs

  Public archive
  This documentation site is composed of detailed walk-through explanations for basic and more complex functionalities for both nmrXiv developers (Developer Guides) and users (Submission Guides). With our documentation-first approach we would like to allow nmrXiv developers and users to discuss proposed features and ensure that the implementations…

  nmrnmr-spectroscopynmr-spectra

  JavaScript

  •

  MIT License

  •0•1•25•1•Updated Aug 9, 2023Aug 9, 2023

• vibspecdb

  Public
  Vibspecdb

  Vue

  •

  MIT License

  •0•0•0•0•Updated Jun 2, 2023Jun 2, 2023

• obi

  Public
  The Ontology for Biomedical Investigations

  Python

  •

  Creative Commons Attribution 4.0 International

  •27•0•0•0•Updated May 8, 2023May 8, 2023

• nmrxiv-python-microservice

  Public archive
  Python

  •1•1•2•1•Updated Mar 12, 2023Mar 12, 2023

• ontotools-cheatsheets

  Public
  ontology tools cheatsheets

  0•2•0•0•Updated Jan 25, 2023Jan 25, 2023

• Fuseki-Box

  Public
  Apache Jena Fuseki in a Vagrant Box

  Jinja

  •0•1•1•0•Updated Jan 3, 2023Jan 3, 2023

• semanticchemistry

  Public
  Chemical Information Ontology

  Java

  •

  Creative Commons Zero v1.0 Universal

  •9•0•0•0•Updated Dec 7, 2022Dec 7, 2022

• nmrxiv-cli

  Public
  MIT License

  •0•0•0•0•Updated Jul 22, 2022Jul 22, 2022

• NMR-Assay-Ontology

  Public archive
  NMR Assay Ontology - This repository is marked as archived, as the work for it has been put on hold for now.

  Shell

  •0•2•2•0•Updated Jun 9, 2022Jun 9, 2022

• helm-charts

  Public
  Helm charts to deploy applications to Kubernetes clusters

  Smarty

  •

  Apache License 2.0

  •2•4•0•0•Updated May 28, 2022May 28, 2022