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    86 repositories

    • data.scilifelab.se

      Public
      SciLifeLab Data Platform
      HTML
      •
      MIT License
      •4•2•0•2•Updated Jan 29, 2025Jan 29, 2025

    • serve

      Public
      SciLifeLab Serve is a platform offering machine learning model serving, data science app hosting (Shiny, Gradio, Streamlit, Dash, etc.), and other tools to life science researchers affiliated with a Swedish research institute.
      JavaScript
      •
      Apache License 2.0
      •1•8•0•3•Updated Jan 29, 2025Jan 29, 2025

    • scilifelab-metadata-templates

      Public
      Python
      •
      MIT License
      •0•0•4•0•Updated Jan 29, 2025Jan 29, 2025

    • pathogens-portal-visualisations

      Public
      This repository holds the visualisations produced for the Swedish Pathogens Portal
      Python
      •
      MIT License
      •0•5•0•1•Updated Jan 28, 2025Jan 28, 2025

    • pathogens-portal

      Public
      Swedish pathogens portal
      bootstrapmarkdownhugocovid-19
      HTML
      •
      MIT License
      •27•13•0•2•Updated Jan 28, 2025Jan 28, 2025

    • pathogens-portal-scripts

      Public
      This repository holds the scripts produced for the Swedish Pathogens Portal
      Python
      •
      MIT License
      •0•1•0•0•Updated Jan 28, 2025Jan 28, 2025

    • dsw-appendix

      Public
      A static site which provides extra documentation for users of the main DSW system
      CSS
      •
      Other
      •1•1•0•5•Updated Jan 28, 2025Jan 28, 2025

    • genome-portal

      Public
      This is the repository for the Swedish Reference Genome Portal, a service facilitating access and discovery of genome data of non-model eukaryotic species studied in Sweden
      Python
      •
      MIT License
      •0•0•0•5•Updated Jan 28, 2025Jan 28, 2025

    • data-platform-scripts

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • node-pathogens-portal-demo

      Public
      A repo to have deployment related stuff for node-pathogens-portal demo site
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • node-pathogens-portal

      Public
      A minimal/example hugo site for node pathogens portal
      MIT License
      •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • node-pathogens-portal-theme

      Public
      Hugo theme for pathogens portal
      HTML
      •
      MIT License
      •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • dds_web

      Public
      A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).
      pythonflask
      Python
      •
      Other
      •8•8•0•1•Updated Jan 27, 2025Jan 27, 2025

    • precision-medicine-portal-frontend

      Public
      React project for the frontend of the Precision Medicine Portal by DC Data Science Node
      TypeScript
      •
      MIT License
      •0•2•0•0•Updated Jan 26, 2025Jan 26, 2025

    • precision-medicine-portal-backend

      Public
      Python
      •
      MIT License
      •0•4•0•0•Updated Jan 26, 2025Jan 26, 2025

    • Anubis

      Public
      Proposal submission and review handling system.
      Python
      •
      MIT License
      •2•2•4•9•Updated Jan 26, 2025Jan 26, 2025

    • RDM-guidelines

      Public
      This is the repository for SciLifelab Research Data Management (RDM) guidelines, a central resource to provide information about data management.
      HTML
      •
      Other
      •4•5•9•0•Updated Jan 24, 2025Jan 24, 2025

    • omero-oauth_labsyspharm

      Public
      OMERO.web application to allow OAuth2 login to OMERO
      Python
      •
      GNU Affero General Public License v3.0
      •4•1•0•1•Updated Jan 22, 2025Jan 22, 2025

    • dds_cli

      Public
      The command line interface for access to the Data Delivery System primarily developed by the SciLifeLab Data Centre.
      clickpythoncommand-line
      Python
      •
      MIT License
      •12•9•3•1•Updated Jan 21, 2025Jan 21, 2025

    • serve-tutorials

      Public
      Tutorials for running applications on Scilifelab Serve.
      Jupyter Notebook
      •
      MIT License
      •1•6•0•0•Updated Jan 17, 2025Jan 17, 2025

    • dc-dynamic

      Public
      Scripts related to Freya applications and Slack
      Python
      •1•2•0•0•Updated Jan 14, 2025Jan 14, 2025

    • shiny-adhd-medication-sweden

      Public
      Dashboard visualising ADHD medication collection among girls and boys (0-19 year olds) in Sweden over time.
      rshinyshiny-apps
      R
      •
      MIT License
      •0•1•0•0•Updated Jan 14, 2025Jan 14, 2025

    • streamlit-image-to-smiles

      Public
      Web app that allows users to predict SMILES for chemical structures depicted in images files.
      Python
      •
      MIT License
      •1•0•0•0•Updated Jan 9, 2025Jan 9, 2025

    • OrderPortal

      Public
      A portal for orders (requests, project applications, etc) to a facility from its users.
      Python
      •
      MIT License
      •12•7•6•6•Updated Jan 7, 2025Jan 7, 2025

    • serve-charts

      Public
      SciLifeLab Serve charts repository
      HTML
      •
      Other
      •1•1•0•1•Updated Dec 17, 2024Dec 17, 2024

    • maintenance-page

      Public
      Simple maintenance page running nginx in a Docker container
      HTML
      •
      MIT License
      •0•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • gradio-flower-classification

      Public
      Web app that allows users to input an image of a flower and get a prediction on what type of flower it is from a machine learning model.
      Python
      •
      MIT License
      •1•1•0•0•Updated Dec 3, 2024Dec 3, 2024

    • covid-sample-collection-database

      Public
      The Swedish COVID-19 Sample Collection Database, part of the COVID-19 Data Portal Sweden
      HTML
      •
      MIT License
      •1•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • DIGIfor1Health_web

      Public
      Liquid
      •
      MIT License
      •0•0•4•0•Updated Nov 19, 2024Nov 19, 2024

    • scilifelabdatacentre.github.io

      Public
      GH Pages for a workshop organized by DC
      JavaScript
      •0•1•0•0•Updated Nov 14, 2024Nov 14, 2024