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    34 repositories

    • comboKR2.0

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • ProjSe

      Public
      Supervised variables selection by projection operators in kernel space
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 6, 2024Sep 6, 2024

    • survivalfm

      Public
      Efficient modelling of linear and pairwise interaction terms in proportional hazards survival models using factorized parametrization.
      R
      •
      MIT License
      •0•0•0•0•Updated Aug 22, 2024Aug 22, 2024

    • GO-LTR-prediction

      Public
      Protein function prediction through latent tensor reconstruction
      gene-ontologyprotein-function-predictionmulti-view-learninglatent-tensor-reconstruction
      Python
      •
      MIT License
      •0•5•0•0•Updated May 19, 2024May 19, 2024

    • gradKCCA

      Public
      Implementations of gradKCCA
      kernel-methodsprojected-gradientscanonical-correlation-analysisalternating-optimization
      MATLAB
      •12•16•0•0•Updated Feb 16, 2024Feb 16, 2024

    • GO_LTR

      Public
      LTR Multiview for Gene Ontology prediction
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 5, 2024Feb 5, 2024

    • comboKR

      Public
      comboKR for predicting drug combination response surfaces
      Python
      •
      MIT License
      •0•1•0•0•Updated Dec 20, 2023Dec 20, 2023

    • LTR_Multiview

      Public
      Polynomial Regression via Latent Tensor Reconstruction - Multiview version
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 9, 2023Jan 9, 2023

    • iokr_for_metabolite_identification

      Public
      Repository for the IOKR and MP-IOKR adapted to the metabolite identification problem.
      MATLAB
      •0•0•0•0•Updated Oct 12, 2022Oct 12, 2022

    • lcms2struct_exp

      Public
      Scripts to run the experiments and analysis for the publication "Joint structural annotation of small molecules using liquid chromatography retention order and tandem mass spectrometry data" by Bach et al.
      Jupyter Notebook
      •
      MIT License
      •2•3•1•0•Updated Sep 7, 2022Sep 7, 2022

    • msms_rt_ssvm

      Public
      Implementation of the LC-MS²Struct model published in the manuscript "Joint structural annotation of small molecules using liquid chromatography retention order and tandem mass spectrometry data" by Bach et al.
      Python
      •
      MIT License
      •5•6•12•0•Updated Aug 28, 2022Aug 28, 2022

    • msms_rt_score_integration

      Public
      Code, Data and Results of the publication: "Probabilistic Framework for Integration of Tandem-Mass Spectrum and Retention Time Information in Small Molecule Identification" by Bach et al. 2020
      lc-msmsretention-order-predictionmass-spectrummetabolite-identification
      MAXScript
      •
      Other
      •2•7•2•0•Updated Dec 6, 2021Dec 6, 2021

    • ComboLTR

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Aug 2, 2021Aug 2, 2021

    • comboFM

      Public
      Machine learning framework for predicting the responses of drug combinations in pre-clinical studies, such as those based on cell lines or patient-derived cells.
      Python
      •14•26•2•0•Updated Oct 25, 2020Oct 25, 2020

    • retention_order_prediction

      Public
      Code, Data and Results of the publication: "Liquid-Chromatography Retention Order Prediction for Metabolite Identification" by Bach et al. 2018
      HTML
      •
      Other
      •1•3•1•0•Updated Apr 22, 2020Apr 22, 2020

    • pairwiseMKL

      Public
      pairwiseMKL package
      Python
      •
      Other
      •5•8•0•0•Updated Mar 7, 2020Mar 7, 2020

    • PMFA

      Public
      Principal Metabolic Flux Mode Analysis
      MATLAB
      •2•2•0•1•Updated Jul 18, 2019Jul 18, 2019

    • MKC_software

      Public
      MATLAB
      •1•0•0•0•Updated Jun 11, 2019Jun 11, 2019

    • scca-hsic

      Public
      MATLAB implementation of SCCA-HSIC
      sparsitydimensionality-reductionkernel-methods
      MATLAB
      •2•4•0•0•Updated Nov 8, 2018Nov 8, 2018

    • cca-tutorial

      Public
      Worked examples
      MATLAB
      •5•15•0•0•Updated Sep 4, 2018Sep 4, 2018

    • Efficient-Discovery-of-Genome-scale-Metabolic-Pathways-for-Synthetic-Biology

      Public
      MATLAB
      •0•0•0•0•Updated Jun 1, 2017Jun 1, 2017

    • softALIGNF

      Public
      ALIGNF+ (soft ALIGNF) python implementation.
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Jul 3, 2016Jul 3, 2016

    • MKC

      Public
      Multi-view Kernel Completion
      MATLAB
      •1•1•0•0•Updated Jun 1, 2016Jun 1, 2016

    • fingerid

      Public
      Molecular fingerprint prediction from MS/MS
      MAXScript
      •
      Apache License 2.0
      •0•2•1•0•Updated May 26, 2016May 26, 2016

    • fswatch-rsync

      Public
      Watches and synchronizes a local folder with a remote folder via another server over ssh
      Shell
      •23•56•3•0•Updated Apr 15, 2016Apr 15, 2016

    • metaCCA-matlab

      Public
      MATLAB
      •
      Other
      •2•9•0•0•Updated Feb 20, 2016Feb 20, 2016

    • ProteinFunctionPrediction

      Public
      Groff
      •0•0•0•0•Updated Jan 27, 2016Jan 27, 2016

    • primal_dual_scca

      Public
      Implementation of the Primal-Dual Sparse Canonical Correlation Analysis
      MATLAB
      •1•2•0•0•Updated Sep 28, 2015Sep 28, 2015

    • DeepBiosphere

      Public
      MATLAB
      •0•0•0•0•Updated Jul 10, 2015Jul 10, 2015

    • PPIprediction-w-IOKR-MKL

      Public
      MATLAB
      •2•3•0•0•Updated Jul 9, 2015Jul 9, 2015