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    40 repositories

    • BarChartViewer

      Public
      JBrowse 1 plugin for displaying data in BarChart format
      JavaScript
      •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • maizemine_doc

      Public
      0•0•0•0•Updated Jun 17, 2024Jun 17, 2024

    • intermine-api-python-examples

      Public
      Example Python scripts using the InterMine API
      Python
      •0•0•0•0•Updated Nov 2, 2023Nov 2, 2023

    • aquamine

      Public
      InterMine source for AquaMine
      Java
      •
      Other
      •0•0•0•0•Updated Jul 27, 2023Jul 27, 2023

    • aquamine_doc

      Public
      AquaMine documentation
      Python
      •0•0•0•0•Updated Jul 26, 2023Jul 26, 2023

    • bovinemine_doc

      Public
      BovineMine documentation
      Python
      •0•0•0•0•Updated Jul 24, 2023Jul 24, 2023

    • faangmine_doc

      Public
      Python
      •0•0•0•0•Updated Jul 24, 2023Jul 24, 2023

    • hymenopteramine_doc

      Public
      HymenopteraMine documentation
      Python
      •0•0•0•0•Updated Jul 24, 2023Jul 24, 2023

    • Apollo

      Public
      Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
      Groovy
      •
      Other
      •85•0•0•0•Updated Mar 23, 2023Mar 23, 2023

    • maizemine

      Public
      InterMine source for MaizeMine
      Java
      •
      Other
      •0•0•0•3•Updated Mar 13, 2023Mar 13, 2023

    • hymenopteramine_intermine

      Public
      InterMine source for HymenopteraMine
      Java
      •
      Other
      •0•0•0•0•Updated Mar 10, 2023Mar 10, 2023

    • faangmine_intermine

      Public
      Intermine source for building FAANGMine
      Java
      •
      Other
      •0•0•0•4•Updated Mar 10, 2023Mar 10, 2023

    • apollo_registration_page

      Public
      registration page for apollo
      Handlebars
      •0•0•0•0•Updated Mar 10, 2023Mar 10, 2023

    • jbrowse_elasticsearch

      Public
      A JBrowse plugin for generating an elasticsearch database and an express.js adaptor for the Names API
      JavaScript
      •0•6•5•2•Updated Jan 12, 2023Jan 12, 2023

    • multibigwig

      Public
      A JBrowse plugin for plotting multiple bigwig subtracks
      JavaScript
      •2•12•8•4•Updated Feb 13, 2022Feb 13, 2022

    • gwasviewer

      Public
      A JBrowse plugin for viewing GWAS data
      JavaScript
      •0•11•5•4•Updated Feb 13, 2022Feb 13, 2022

    • sashimiplot

      Public
      A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data
      JavaScript
      •3•14•7•0•Updated Apr 30, 2021Apr 30, 2021

    • bovinemine

      Public
      A data mining warehouse for Bos taurus
      Perl
      •
      Other
      •2•0•3•4•Updated Feb 8, 2021Feb 8, 2021

    • gccontent

      Public
      A JBrowse plugin for plotting GC content and GC skew
      JavaScript
      •2•5•1•0•Updated Aug 21, 2020Aug 21, 2020

    • HymenopteraMine_v1.4

      Public
      HymenopteraMine v1.4 documentation
      HTML
      •0•0•0•0•Updated Nov 21, 2019Nov 21, 2019

    • HymenopteraMine_v1.0

      Public
      HymenopteraMine v1.0 documentation
      JavaScript
      •0•1•0•0•Updated Oct 17, 2019Oct 17, 2019

    • Apollo-LSAA

      Public
      A plugin to Apollo that allows for annotating Alternative Locus across a genome
      gmod-apollo
      Roff
      •0•0•0•0•Updated Sep 12, 2019Sep 12, 2019

    • projectionplugin

      Public
      A JBrowse plugin for projecting coordinates. Only reverse complement is "stable"
      JavaScript
      •2•1•2•1•Updated Aug 23, 2019Aug 23, 2019

    • multivariantviewer

      Public
      A JBrowse plugin with a custom variant track for multi-VCF files and optionally plotting LD scores
      JavaScript
      •0•10•3•0•Updated Apr 4, 2019Apr 4, 2019

    • myvariantviewer

      Public
      A JBrowse plugin for viewing info from mygene.info and myvariant.info
      JavaScript
      •4•9•2•0•Updated Jan 2, 2019Jan 2, 2019

    • intermine

      Public
      A powerful open source data warehouse system
      data-warehouseinterminebovineminehymenopteraminemaizemine
      Java
      •
      Other
      •347•0•25•0•Updated Feb 14, 2018Feb 14, 2018

    • ontograph

      Public
      Ontology graph widget
      JavaScript
      •1•3•0•0•Updated Oct 30, 2017Oct 30, 2017

    • apollo_domain_classes

      Public
      A grails plugin that copies the domain classes of Apollo, allowing other plugins to take advantage of the Apollo database objects (ORM)
      Groovy
      •0•0•0•0•Updated Sep 13, 2017Sep 13, 2017

    • intermine-CDN

      Public
      JavaScript, Cascading Style Sheet Content Delivery Network
      JavaScript
      •23•0•0•0•Updated Jul 13, 2017Jul 13, 2017

    • sequenceserver

      Public
      Intuitive local web frontend for the BLAST bioinformatics tool
      Ruby
      •
      GNU Affero General Public License v3.0
      •114•0•0•0•Updated May 9, 2017May 9, 2017