Functional Genomics Center Zurich ETHZ | UZH

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23 repositories

bfabricShiny
Public
Manage life sciences data using R and b-fabric - a WSDL/REST interface and a tool box; main focus on MS data
wsdl mass-spectrometry experiments omics bfabric shiny
R
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GNU General Public License v3.0
•1•8•11•0•Updated Dec 24, 2024Dec 24, 2024
depiction
Public
Process and Visualize Mass-Spectrometry Imaging (MSI) data
Python
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Apache License 2.0
•0•2•4•1•Updated Dec 23, 2024Dec 23, 2024
bfabricPy
Public
API and commad line tools for b-fabric
api rest-api soap wsdl python3 bfabric shiny-r
Python
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GNU General Public License v3.0
•1•4•15•1•Updated Dec 20, 2024Dec 20, 2024
qg
Public
MS queue generator
R
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GNU General Public License v3.0
•0•1•0•0•Updated Dec 12, 2024Dec 12, 2024
rawrr
Public
Access Orbitrap data in R lang using C# .NET assembly - bioconductor package
fast multiplatform mass-spectrometry rpackage orbitrap-ms
R
•9•55•12•0•Updated Dec 4, 2024Dec 4, 2024
prolfqua
Public
Differential Expression Analysis tool box R lang package for omics data
quality-control r-package hypothesis-testing protein-quantification differential-expression-analysis rstats-package proteomics-data-analysis
R
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MIT License
•7•41•15•0•Updated Dec 3, 2024Dec 3, 2024
BioBeamer
Public
Python
•3•4•1•0•Updated Nov 20, 2024Nov 20, 2024
koina-paleo
Public
Makefile
•0•0•0•0•Updated Oct 9, 2024Oct 9, 2024
MsBackendRawFileReader
Public
Spectra MsBackend for Thermo Fisher Scientific's New RawFileReader
R
•2•5•9•0•Updated Oct 1, 2024Oct 1, 2024
rawDiag
Public
Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package
visualization fast r multiplatform mass-spectrometry rpackage orbitrap
R
•11•36•39•0•Updated May 1, 2024May 1, 2024
RawFileReader
Public
C#
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Other
•20•0•0•0•Updated Sep 8, 2023Sep 8, 2023
msqc1
Public
mirror of bioc msqc1 package
quality-control hplc lcms
R
•0•0•0•0•Updated Dec 9, 2022Dec 9, 2022
specL
Public
prepare peptide spectrum matches for use in targeted proteomics using R and Bioconductor
proteomics dia dda mass-spectrometry
R
•1•1•1•0•Updated Dec 8, 2022Dec 8, 2022
prolfquabenchmark_forWitold
Public
prolfqua_manuscript_witold
TeX
•4•0•0•0•Updated Jun 7, 2022Jun 7, 2022
RprxHUPO2021
Public
R
•0•0•0•0•Updated Nov 11, 2021Nov 11, 2021
alphapept
Public
A modular, python-based framework for mass spectrometry. Powered by nbdev.
Jupyter Notebook
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Apache License 2.0
•30•0•0•0•Updated Jul 26, 2021Jul 26, 2021
fcc
Public
An automated rule-based processing tool for life science data.
automation reproducible-science python instrument life-science-data
Python
•1•1•0•0•Updated Oct 26, 2020Oct 26, 2020
PyFGCZ
Public
Move and Convert Mass Spectrometry Data using BioBeamer and FCC
automation robot workflow-engine python3 high-throughput data-processing staging-algorithm
Python
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GNU General Public License v3.0
•1•2•2•0•Updated Aug 11, 2020Aug 11, 2020
prosit
Public
Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019" DOI 10.1038/s41592-019-0426-7
Python
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Apache License 2.0
•45•0•0•0•Updated Nov 19, 2019Nov 19, 2019
ISCB2017
Public
This R package contains data and vignette files for a Pigeon Pea (Cajanus cajan) project from a Indo-Swiss Collaboration in Biotechnology (ISCB) training course on proteome informatics given from January 21th to January 25th 2017 at the National Research Centre on Plant Biotechnology (NRCPB) in New Delhi-110012 by JG, WEW, and CP.
analysis nrcpb iscb protein-quantification pigeon-pea
Python
•0•2•0•0•Updated Sep 4, 2018Sep 4, 2018
shinyStore
Public
R package that adds HTML5 Local Storage support to Shiny
R
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MIT License
•18•0•0•0•Updated Nov 25, 2016Nov 25, 2016
xlinkx
Public
0•0•0•0•Updated Sep 7, 2016Sep 7, 2016
cakeme
Public
Python
•0•0•0•0•Updated Aug 23, 2016Aug 23, 2016