Erasmus MC

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9 repositories

Yleaf
Public
Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data
python next-generation-sequencing prediction-algorithm haplogroup y-chromosome
Python
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GNU General Public License v3.0
•10•23•3•0•Updated Sep 23, 2024Sep 23, 2024
MalePedigreeToolbox
Public
Tools for investigating male pedigrees
Python
•0•1•0•0•Updated Sep 5, 2024Sep 5, 2024
str_nomenclature
Public
Convert a sequence to simple STR nomenclature
Python
•0•0•0•0•Updated Jan 11, 2024Jan 11, 2024
de-goulash
Public
Genetic deconvolution of barcoded single cell RNA-seq
C
•0•7•0•0•Updated Jan 23, 2023Jan 23, 2023
nanopore-analysis-Pseudoclostridium
Public
R
•0•0•0•0•Updated Aug 23, 2021Aug 23, 2021
Clean_tree2
Public
Forensic Y-SNP analysis beyond SNaPshot: High-resolution Y-chromosomal haplogrouping from low quality and quantity DNA using Ion AmpliSeq and targeted massively parallel sequencing
Python
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GNU General Public License v3.0
•1•2•0•0•Updated Dec 10, 2020Dec 10, 2020
Y-CpG
Public
Male-specific age estimation based on Y-chromosomal DNA methylation
rstudio prediction age dna-methylation 450k
R
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MIT License
•0•0•0•0•Updated Dec 4, 2020Dec 4, 2020
evCpGs
Public
CpGs whose methylation variation is equivalent between monozygotic co-twins and unrelated individuals
R
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MIT License
•0•0•0•0•Updated Nov 13, 2020Nov 13, 2020
TissueID
Public
A novel taxonomy-independent deep learning microbiome approach allow for accuaret classification of human epithelial materials
deep-neural-networks prediction artificial-intelligence classification microbiome 16s-rrna
Python
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GNU General Public License v3.0
•0•0•0•0•Updated Jun 11, 2019Jun 11, 2019