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@humanlongevity Human Longevity, Inc.

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    9 repositories

    • HLA

      Public
      xHLA: Fast and accurate HLA typing from short read sequence data
      genomicssequencingvariantsvariant-callinghla-typing
      Jupyter Notebook
      •
      Other
      •52•104•47•1•Updated Oct 13, 2023Oct 13, 2023

    • tredparse

      Public
      TREDPARSE: HLI Short Tandem Repeat (STR) caller
      genomicsgenome-annotationgenetic-analysissequence-alignmentsgenome-sequencing
      Python
      •
      Other
      •7•24•8•2•Updated Aug 20, 2020Aug 20, 2020

    • mbmi

      Public
      R
      •0•2•0•0•Updated Mar 9, 2019Mar 9, 2019

    • 3DTS

      Public
      Scala
      •
      Other
      •3•0•0•0•Updated Sep 8, 2017Sep 8, 2017

    • transvar

      Public
      TransVar - multiway annotator for precision medicine
      Python
      •
      Other
      •34•0•0•0•Updated May 30, 2016May 30, 2016

    • htslib

      Public
      C library for high-throughput sequencing data formats
      C
      •
      Other
      •446•0•0•0•Updated May 5, 2016May 5, 2016

    • luigi

      Public
      Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.
      Python
      •
      Apache License 2.0
      •2.4k•0•0•0•Updated Mar 12, 2016Mar 12, 2016

    • bcftools

      Public
      This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
      C
      •
      Other
      •239•0•0•0•Updated Oct 28, 2015Oct 28, 2015

    • hgvs

      Public
      HGVS variant name parsing and generation
      Python
      •
      MIT License
      •80•1•0•0•Updated Jun 15, 2015Jun 15, 2015