Repositories list

• defense-finder

  Public
  Systematic search of all known anti-phage systems.

  Python

  •

  GNU General Public License v3.0

  •14•82•3•0•Updated Nov 6, 2024Nov 6, 2024

• antidefensefinder_2024

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•7•0•0•Updated Sep 20, 2024Sep 20, 2024

• cury_mordret_et_al_supplementary_data

  Public
  Supplementary data for the paper "Conservation of bacterial antiviral systems across domains of life reveals novel defense mechanisms in humans", by Cury, Mordret et al.

  0•1•0•0•Updated Jul 22, 2024Jul 22, 2024

• defense-finder-models

  Public
  MacSyFinder models allowing for a systematic search of anti-phage systems

  GNU General Public License v3.0

  •7•20•0•2•Updated Jul 19, 2024Jul 19, 2024

• lanthiphage_2024

  Public
  Git repository containing the code, alignement, trees and genomic models used in for the article: "A family of lanthipeptides with anti-phage function"

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Jun 27, 2024Jun 27, 2024

• is110_nop5

  Public
  Evolutionary history of IS110/Nop5

  ReScript

  •0•0•0•0•Updated Jun 18, 2024Jun 18, 2024

• coli_phage_interactions_2023

  Public
  Git repository containing the code and genomics data published in the article "Predicting phage-bacteria interactions at the strain level from genomes"

  Jupyter Notebook

  •1•4•0•0•Updated Jan 15, 2024Jan 15, 2024

• viperins_evolution_2023

  Public
  TeX

  •0•1•0•0•Updated Sep 26, 2023Sep 26, 2023

• Estimating_gender_bias_in_references

  Public
  Jupyter Notebook

  •0•2•0•0•Updated Jun 13, 2023Jun 13, 2023

• Actinobacteria_defense_systems

  Public
  Jupyter Notebook

  •2•3•0•0•Updated Mar 29, 2023Mar 29, 2023

• defense-finder-web

  Public
  Defense Finder as a web service

  TypeScript

  •1•0•0•0•Updated Feb 18, 2022Feb 18, 2022