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@mdmparis

mdmparis

Molecular Diversity of Microbes Laboratory, Paris

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  1. defense-finder defense-finder Public

    Systematic search of all known anti-phage systems.

    Python 82 14

  2. defense-finder-models defense-finder-models Public

    MacSyFinder models allowing for a systematic search of anti-phage systems

    20 7

  3. antidefensefinder_2024 antidefensefinder_2024 Public

    Jupyter Notebook 7

  4. coli_phage_interactions_2023 coli_phage_interactions_2023 Public

    Git repository containing the code and genomics data published in the article "Predicting phage-bacteria interactions at the strain level from genomes"

    Jupyter Notebook 4 1

  5. Actinobacteria_defense_systems Actinobacteria_defense_systems Public

    Jupyter Notebook 3 2

  6. Estimating_gender_bias_in_references Estimating_gender_bias_in_references Public

    Jupyter Notebook 2

Repositories

Showing 10 of 11 repositories
  • defense-finder Public

    Systematic search of all known anti-phage systems.

    mdmparis/defense-finder’s past year of commit activity
    Python 82 GPL-3.0 14 3 (1 issue needs help) 0 Updated Nov 6, 2024
  • mdmparis/antidefensefinder_2024’s past year of commit activity
    Jupyter Notebook 7 GPL-3.0 0 0 0 Updated Sep 20, 2024
  • cury_mordret_et_al_supplementary_data Public

    Supplementary data for the paper "Conservation of bacterial antiviral systems across domains of life reveals novel defense mechanisms in humans", by Cury, Mordret et al.

    mdmparis/cury_mordret_et_al_supplementary_data’s past year of commit activity
    1 0 0 0 Updated Jul 22, 2024
  • defense-finder-models Public

    MacSyFinder models allowing for a systematic search of anti-phage systems

    mdmparis/defense-finder-models’s past year of commit activity
    20 GPL-3.0 7 0 2 Updated Jul 19, 2024
  • lanthiphage_2024 Public

    Git repository containing the code, alignement, trees and genomic models used in for the article: "A family of lanthipeptides with anti-phage function"

    mdmparis/lanthiphage_2024’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Jun 27, 2024
  • is110_nop5 Public

    Evolutionary history of IS110/Nop5

    mdmparis/is110_nop5’s past year of commit activity
    ReScript 0 0 0 0 Updated Jun 18, 2024
  • coli_phage_interactions_2023 Public

    Git repository containing the code and genomics data published in the article "Predicting phage-bacteria interactions at the strain level from genomes"

    mdmparis/coli_phage_interactions_2023’s past year of commit activity
    Jupyter Notebook 4 1 0 0 Updated Jan 15, 2024
  • mdmparis/viperins_evolution_2023’s past year of commit activity
    TeX 1 0 0 0 Updated Sep 26, 2023
  • mdmparis/Estimating_gender_bias_in_references’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Jun 13, 2023
  • mdmparis/Actinobacteria_defense_systems’s past year of commit activity
    Jupyter Notebook 3 2 0 0 Updated Mar 29, 2023

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