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    4 repositories

    • CroCoDeEL

      Public
      CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
      quality-controlmetagenomicscontamination-detection
      Python
      •
      GNU General Public License v3.0
      •0•20•1•0•Updated Feb 10, 2025Feb 10, 2025

    • meteor

      Public
      Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-level taxonomic profiling (Bacteria, Archaea and Eukaryotes), functional analysis and strain-level population structure inference.
      metagenomicstaxonomic-profilingstrain-profilingfunctionnal-profiling
      Python
      •
      GNU General Public License v3.0
      •0•17•18•0•Updated Jan 18, 2025Jan 18, 2025

    • OneNet

      Public
      OneNet is a stability based network inference aggregation method from whole metagenome sequencing data, which aims at fostering reproducibility and precision
      R
      •
      MIT License
      •0•1•0•0•Updated Dec 17, 2024Dec 17, 2024

    • ESKRIM

      Public
      ESKRIM is a reference-free tool that compares microbial richness in shotgun metagenomic samples by counting k-mers
      metagenomicsalpha-diversityreference-free
      Python
      •
      GNU General Public License v3.0
      •0•5•0•0•Updated Jul 25, 2024Jul 25, 2024