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    30 repositories

    • renewal

      Public
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•2•Updated Oct 21, 2024Oct 21, 2024

    • incubator2024

      Public
      Incubator 2024 project - Modelling TB in Indonesia
      HTML
      •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • wpro-working

      Public
      Work in progress/scratchpad for WPRO contract
      Jupyter Notebook
      •2•1•0•2•Updated Oct 9, 2024Oct 9, 2024

    • summer-textbook

      Public
      A textbook of infectious disease modelling, using the summerepi library
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •1•2•0•0•Updated Oct 9, 2024Oct 9, 2024

    • AuTuMN

      Public
      Jupyter Notebook
      •
      Other
      •6•13•0•30•Updated Oct 4, 2024Oct 4, 2024

    • particle-filter

      Public
      Our implementation of a particle filter modelling approach.
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • pythonlearning

      Public
      Python training workshops
      Jupyter Notebook
      •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • aust-renewal

      Public
      Application of a renewal model to COVID-19 epidemics in Australia in 2022 to examine transmission dynamics and the effective reproduction number.
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Aug 23, 2024Aug 23, 2024

    • aust-covid

      Public
      Analysis of the major initial waves of the Australian COVID-19 epidemic
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•1•Updated Aug 1, 2024Aug 1, 2024

    • renewal-wpr-analysis

      Public
      This repo houses code for analysing the dynamics of the Rt of COVID-19 in three Western Pacific region countries (Philippines, Malaysia and Vietnam). The analysis utilises the Epidemiological Modelling Unit, Monash University renewal model.
      Jupyter Notebook
      •0•0•0•0•Updated Jul 31, 2024Jul 31, 2024

    • summer3proto

      Public
      Experimental scratchpad for summer3
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • WPROEpiModellingTraining

      Public
      Notebooks and support documents for epidemiological modelling training
      Jupyter Notebook
      •0•0•0•0•Updated Jul 8, 2024Jul 8, 2024

    • summer2

      Public
      A fast, domain-specific toolkit for epidemiological compartmental models
      Python
      •
      Other
      •1•4•0•0•Updated Apr 23, 2024Apr 23, 2024

    • covid19_school_closures

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Mar 14, 2024Mar 14, 2024

    • outputs

      Public
      HTML outputs
      HTML
      •0•0•0•0•Updated Mar 13, 2024Mar 13, 2024

    • covid19_school_closures_data

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Mar 13, 2024Mar 13, 2024

    • school_closures_web

      Public
      0•0•0•0•Updated Mar 8, 2024Mar 8, 2024

    • estival

      Public
      Calibration and optimization tools for summer
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Feb 29, 2024Feb 29, 2024

    • DFAT

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 7, 2024Jan 7, 2024

    • emutools

      Public
      General tools to support Monash EMU projects, starting with code for TeX documentation
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Dec 13, 2023Dec 13, 2023

    • monash-emu.github.io

      Public
      Github pages site for Monash-EMU
      0•0•0•0•Updated Oct 25, 2023Oct 25, 2023

    • computegraph

      Public
      Tools for managing computation graphs based on dictionaries and networkx
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Sep 27, 2023Sep 27, 2023

    • shiny-pearl

      Public
      R
      •
      MIT License
      •1•0•0•0•Updated Aug 1, 2023Aug 1, 2023

    • summer

      Public
      A compartmental disease modelling framework (Python)
      Python
      •
      Other
      •1•7•0•0•Updated May 29, 2023May 29, 2023

    • summer-vynnycky-white-validation

      Public
      Validate functionality of summer by comparing against Vynnycky and White textbook
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jan 16, 2023Jan 16, 2023

    • AuTuMN_data

      Public
      Input data repository for AuTuMN
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 27, 2022Jun 27, 2022

    • covid_vaccine_shiny_app

      Public
      HTML
      •0•0•0•0•Updated Dec 8, 2021Dec 8, 2021

    • devtest

      Public archive
      Code test for devs
      Python
      •1•0•0•0•Updated Mar 3, 2021Mar 3, 2021

    • legacy-summer

      Public archive
      General structure for creating epidemiological models in R
      Python
      •
      MIT License
      •3•0•0•0•Updated Apr 3, 2020Apr 3, 2020

    • Legacy-AuTuMN

      Public archive
      Legacy implementation of the Australian Tuberculosis Modelling Network (AuTuMN) framework
      Python
      •
      Other
      •0•0•0•2•Updated Jan 29, 2020Jan 29, 2020