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    35 repositories

    • fiphde

      Public
      Forecasting Influenza in Support of Public Health Decision Making
      R
      •
      GNU General Public License v3.0
      •2•3•3•0•Updated Nov 4, 2024Nov 4, 2024

    • rplanes

      Public
      R package to conduct plausibility analysis of epidemiological signals
      R
      •
      Other
      •3•8•3•0•Updated Sep 18, 2024Sep 18, 2024

    • skater

      Public
      SKATE R Utilities
      TeX
      •
      Other
      •4•9•0•0•Updated Jun 19, 2024Jun 19, 2024

    • scaleParetoImputeMin

      Public
      Scale and imputation R recipe steps
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 28, 2024May 28, 2024

    • metscale

      Public
      MetScale: snakemake workflows to scale metagenome analyses
      open-sourcesnakemake-workflowsmetagenomicstaxonomic-classifications
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9•18•7•2•Updated May 20, 2024May 20, 2024

    • SigmaCCS

      Public
      Highly accurate and large-scale collision cross section prediction with graph neural network for compound identification
      Python
      •
      MIT License
      •7•0•0•0•Updated May 17, 2024May 17, 2024

    • fiphde-engines

      Public
      Containerized model engines for operational flu forecasting
      R
      •
      MIT License
      •0•0•0•0•Updated May 16, 2024May 16, 2024

    • Flusight-forecast-data

      Public
      R
      •
      Other
      •66•0•0•0•Updated May 8, 2024May 8, 2024

    • FluSight-forecast-hub

      Public
      R
      •
      MIT License
      •55•0•0•0•Updated May 8, 2024May 8, 2024

    • REID

      Public
      0•0•0•0•Updated Feb 28, 2024Feb 28, 2024

    • sigstore_test

      Public
      Testing SigStore Cosign with different setups
      0•0•0•0•Updated Feb 21, 2024Feb 21, 2024

    • nrc

      Public
      Non-reference concordance
      Shell
      •
      MIT License
      •2•1•0•0•Updated Jan 22, 2024Jan 22, 2024

    • goof

      Public
      Super vulnerable todo list application
      JavaScript
      •
      Apache License 2.0
      •3k•0•0•0•Updated Dec 5, 2023Dec 5, 2023

    • screening_course

      Public
      Biosecurity sequence screening training course for bioengineers, partially funded by BioMADE (https://www.biomade.org/biosecurity-training-course)
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Nov 8, 2023Nov 8, 2023

    • pracpac

      Public
      Practical R Packaging with Docker
      R
      •
      Other
      •0•25•2•0•Updated Jun 29, 2023Jun 29, 2023

    • dsttcode

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated May 30, 2023May 30, 2023

    • proteinfer

      Public
      Deep networks for protein functional inference
      Jupyter Notebook
      •
      Apache License 2.0
      •27•0•0•0•Updated Apr 20, 2023Apr 20, 2023

    • lrn_linux_epi2me_start

      Public
      Startup script for epi2meLabs for LRN
      Shell
      •0•0•0•0•Updated Apr 14, 2023Apr 14, 2023

    • crisflash

      Public
      C
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Apr 13, 2023Apr 13, 2023

    • usethis

      Public
      Set up commonly used 📦 components
      R
      •
      Other
      •285•0•0•0•Updated Feb 14, 2023Feb 14, 2023

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.3k•0•0•0•Updated Dec 15, 2022Dec 15, 2022

    • k2v

      Public
      Shell
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Nov 17, 2022Nov 17, 2022

    • DoD-CLI-forecast-data

      Public
      DoD AFHSD-IB CLI Forecasting Collaboration
      Other
      •4•0•0•0•Updated Oct 28, 2022Oct 28, 2022

    • Flusight-ensemble

      Public
      R
      •4•0•0•0•Updated Oct 27, 2022Oct 27, 2022

    • habssed-data-ms

      Public
      HABSSED Phase I data descriptor manuscript
      TeX
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•1•Updated Aug 3, 2022Aug 3, 2022

    • focustools

      Public
      Forecasting COVID-19 in the US
      R
      •
      GNU General Public License v3.0
      •0•0•3•0•Updated Jul 8, 2022Jul 8, 2022

    • vcferr

      Public
      Probabilistic VCF genotype error simulation
      Python
      •
      MIT License
      •1•4•0•0•Updated Jun 3, 2022Jun 3, 2022

    • GLIMPSE

      Public
      Forked from https://github.com/odelaneau/GLIMPSE
      C++
      •
      MIT License
      •1•0•0•0•Updated May 12, 2022May 12, 2022

    • staged-recipes

      Public
      A place to submit conda recipes before they become fully fledged conda-forge feedstocks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5k•0•0•0•Updated May 2, 2022May 2, 2022

    • siann

      Public
      SIANN: Strain Identification by Alignment to Near Neighbors
      Python
      •
      GNU General Public License v3.0
      •1•1•1•0•Updated Apr 13, 2022Apr 13, 2022