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Abundance Filtering
Adam Taranto edited this page Sep 23, 2024
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1 revision
Filter KmerCountTable objects on min or max kmer abundance.
# Drop all records with counts > 2
kmer_table.mincut(2)
# Drop all records with counts > 5
kmer_table.maxcut(5)Installing Oxli
Basic Setup
For Developers
Getting Started
Getting Started
Counting Kmers
Basic Counting
Extracting from Files
Handling Bad Kmers
Looking up Counts
Single Kmer Lookup
Multiple Kmer Lookup
Removing Records Remove Kmers Abundance Filtering
Exploring Count Tables
Iterating Records
Attributes
Set Operations
Basic SetOps
Exporting Data
Histo: Export Frequency Counts
Dump: Write Hash:Count Pairs
Save and Load KmerCountTables