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odgi stats: -S per default
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subwaystation committed Jun 20, 2024
1 parent b3c1b58 commit 337d5c0
Showing 1 changed file with 20 additions and 1 deletion.
21 changes: 20 additions & 1 deletion src/subcommand/stats_main.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -177,7 +177,26 @@ int main_stats(int argc, char** argv) {
std::cout << "---" << std::endl;
}

if (args::get(_summarize) || _multiqc) {
// per default, we want option -S to be shown
const bool no_args = !(args::get(_weakly_connected_components) ||
args::get(_num_self_loops) ||
args::get(_show_nondeterministic_edges) ||
args::get(base_content) ||
path_delim ||
args::get(_file_size) ||
_pangenome_sequence_class_counts ||
args::get(mean_links_length) ||
args::get(dont_penalize_gap_links) ||
args::get(sum_of_path_node_distances) ||
args::get(penalize_diff_orientation) ||
args::get(path_statistics) ||
args::get(weighted_feedback_arc) ||
args::get(weighted_reversing_join) ||
args::get(links_length_per_nuc) ||
args::get(_multiqc) ||
args::get(_yaml));

if (args::get(_summarize) || _multiqc || no_args) {
uint64_t length_in_bp = 0, node_count = 0;
graph.for_each_handle([&](const handle_t& h) {
length_in_bp += graph.get_length(h);
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