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Frequent asked questions (FAQ) and known bugs
Patrick Douglas edited this page Jun 20, 2018
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3 revisions
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Error:
misa.pl not found or misa.pl permission denied
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Solution:
Check if you are running the **Seqs-Extractor** in the same hard disk of your Linux system as well
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Error:
The program 'blastx' is currently not installed. You can install it by typing:sudo apt-get install ncbi-blast+ dpkg: error processing archive blast+.tools/ncbi-blast_2.6.0+-2_amd64.deb (--install): conflicting packages - not installing ncbi-blast Errors were encountered while processing: blast+.tools/ncbi-blast_2.6.0+-2_amd64.deb
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Solution:
Run `sudo apt-get purge blast2 -y` and try install **Seqs-Extractor** again
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Error:
Error: NCBI C++ Exception: T0 "/home/coremake/release_build/build/PrepareRelease_Linux64-blastn ???:0 blastn() [0x9a93a9]...offset=0x0 addr=0x9a93a9
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Solution:
Maybe the **blast database** is corrupted try run the `makeblastdb` command again or select an option that automatically formats the **blast** database (See [Perform a friendly BLAST search](https://github.com/patrick-douglas/Seqs-Extractor/wiki/Perform-a-friendly-BLAST--search))
- Home
- How to install
- How to run
- BLAST+ in Seqs-Extractor
- SSR analysis using Seqs-Extractor and MISA
- Extracting sequences from any .FASTA file using any TEXT file
- Extracting Trinity Differential Expression transcripts
- Example files of SeqsExtractor
- Frequent asked questions (FAQ) and known bugs
- Third party software that comes with Seqs Extractor
- References
- [DEPRECATED Options]