Refactor FileStream and HiCFileWriter to be more robust against data races #215
Workflow file for this run
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| # Copyright (C) 2024 Roberto Rossini <roberros@uio.no> | |
| # SPDX-License-Identifier: MIT | |
| name: Test packaging | |
| on: | |
| push: | |
| branches: [main] | |
| paths: | |
| - ".github/workflows/build-conan-deps.yml" | |
| - ".github/workflows/packaging.yml" | |
| - "cmake/**" | |
| - "src/**" | |
| - "test/packaging/**" | |
| - "CMakeLists.txt" | |
| - "conanfile.py" | |
| pull_request: | |
| paths: | |
| - ".github/workflows/build-conan-deps.yml" | |
| - ".github/workflows/packaging.yml" | |
| - "cmake/**" | |
| - "src/**" | |
| - "test/packaging/**" | |
| - "CMakeLists.txt" | |
| - "conanfile.py" | |
| # https://stackoverflow.com/a/72408109 | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| build-conan-deps: | |
| name: Build Conan deps | |
| uses: paulsengroup/hictk/.github/workflows/build-conan-deps.yml@main | |
| with: | |
| os: ubuntu-20.04 | |
| test-find-package: | |
| runs-on: ubuntu-latest | |
| name: Test find_package() | |
| needs: build-conan-deps | |
| container: | |
| image: ghcr.io/paulsengroup/ci-docker-images/ubuntu-24.04-cxx-clang-18 | |
| options: "--user=root" | |
| env: | |
| CONAN_HOME: "/opt/conan/" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Fix permissions | |
| run: | | |
| chown -R $(id -u):$(id -g) $PWD | |
| - name: Restore Conan cache | |
| uses: actions/cache/restore@v4 | |
| with: | |
| key: ${{ needs.build-conan-deps.outputs.conan-key }} | |
| path: ${{ env.CONAN_HOME }}/p | |
| fail-on-cache-miss: true | |
| - name: Restore CMake configs | |
| uses: actions/cache/restore@v4 | |
| with: | |
| key: ${{ needs.build-conan-deps.outputs.cmake-prefix-release-key }} | |
| path: /tmp/cmake-prefix-rel.tar | |
| fail-on-cache-miss: true | |
| - name: Extract CMake configs | |
| run: | | |
| mkdir conan-env | |
| tar -xf /tmp/cmake-prefix-rel.tar -C conan-env/ --strip-components=1 | |
| - name: Configure project | |
| run: | | |
| cmake -DCMAKE_BUILD_TYPE=Release \ | |
| -DHICTK_ENABLE_TESTING=OFF \ | |
| -DHICTK_BUILD_TOOLS=OFF \ | |
| -DCMAKE_PREFIX_PATH="$PWD/conan-env" \ | |
| -DCMAKE_INSTALL_PREFIX=hictk_install \ | |
| -S . \ | |
| -B hictk_build | |
| - name: Install hictk | |
| run: | | |
| cmake --build hictk_build/ | |
| cmake --install hictk_build/ | |
| - name: Configure test project | |
| run: | | |
| CMAKE_PREFIX_PATH="$PWD/conan-env;$PWD/hictk_install/lib/cmake/hictk/" | |
| cmake -DCMAKE_BUILD_TYPE=Release \ | |
| -DCMAKE_PREFIX_PATH="$CMAKE_PREFIX_PATH" \ | |
| -S test/packaging/test_find_package \ | |
| -B test_find_package_build | |
| - name: Build test project | |
| run: cmake --build test_find_package_build | |
| - name: Test binary | |
| run: test_find_package_build/hictk_test_find_package | |
| test-add-subdirectory: | |
| runs-on: ubuntu-latest | |
| name: Test add_subdirectory() | |
| needs: build-conan-deps | |
| container: | |
| image: ghcr.io/paulsengroup/ci-docker-images/ubuntu-24.04-cxx-clang-18 | |
| options: "--user=root" | |
| env: | |
| CONAN_HOME: "/opt/conan/" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Fix permissions | |
| run: | | |
| chown -R $(id -u):$(id -g) $PWD | |
| - name: Restore Conan cache | |
| uses: actions/cache/restore@v4 | |
| with: | |
| key: ${{ needs.build-conan-deps.outputs.conan-key }} | |
| path: ${{ env.CONAN_HOME }}/p | |
| fail-on-cache-miss: true | |
| - name: Restore CMake configs | |
| uses: actions/cache/restore@v4 | |
| with: | |
| key: ${{ needs.build-conan-deps.outputs.cmake-prefix-release-key }} | |
| path: /tmp/cmake-prefix-rel.tar | |
| fail-on-cache-miss: true | |
| - name: Extract CMake configs | |
| run: | | |
| mkdir conan-env | |
| tar -xf /tmp/cmake-prefix-rel.tar -C conan-env/ --strip-components=1 | |
| - name: Configure project | |
| run: | | |
| ln -s "$PWD" test/packaging/test_add_subdirectory/hictk_root | |
| cmake -DCMAKE_BUILD_TYPE=Release \ | |
| -DCMAKE_PREFIX_PATH="$PWD/conan-env" \ | |
| -S test/packaging/test_add_subdirectory \ | |
| -B test_add_subdirectory_build | |
| - name: Build test project | |
| run: cmake --build test_add_subdirectory_build | |
| - name: Test binary | |
| run: test_add_subdirectory_build/hictk_test_add_subdirectory | |
| packaging-status-check: | |
| name: Status Check (packaging) | |
| if: ${{ always() }} | |
| runs-on: ubuntu-latest | |
| needs: | |
| - test-find-package | |
| - test-add-subdirectory | |
| steps: | |
| - name: Collect job results | |
| if: | | |
| needs.test-find-package.result != 'success' || | |
| needs.test-add-subdirectory.result != 'success' | |
| run: exit 1 |