v1.1.0

What's Changed

The highlights of this release are:

• Providing pre-built wheels for Python 3.13 #113
• Enable efficient computation of various descriptive statistics from streams of pixels #129
• Improved API ergonomics #123

The release also comes with a handful of bug fixes, minor performance improvements, and better documentation.

New features and improvements

• Support Python 3.13 by @robomics in #113
• Improve error message generated when invalid params are passed to hictkpy.File() by @robomics in #115
• Annotate functions with nb::rv_policy to avoid unnecessary copies by @robomics in #118
• Improve API of MultiResFile class by @robomics in #126
• Add accessors for BinTable objects to FileWriter classes by @robomics in #128
• Make API more ergonomic by @robomics in #123
• Implement several methods to efficiently compute various descriptive statistics given PixelSelector object by @robomics in #129
• Bring back compatibility with recent versions of MSVC by @robomics in #133
• Return balancing weights as numpy arrays by @robomics in #114

Bugfix

• Fix typo in cooler.FileWriter class by @robomics in #116
• Fix bug in BinTable::make_iterable() by @robomics in #121
• Fix PixelSelector::get_coord*() by @robomics in #122
• Ensure BinTable::to_df() does not fail when called on tables from .hic files by @robomics in #127
• Fix datarace in logging code by @robomics in #131
• Rename "bin_size" attribute from .hic files to "bin-size" by @robomics in #134

Updates to CI

• Use the latest manylinux_2_28 image available by @robomics in #119
• Pin manylinux image to avoid invalidating CI build cache too frequently by @robomics in #120
• Bump pypa/cibuildwheel from 2.21 to 2.22 by @dependabot in #130
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #101

Packaging and tooling

• Bump deps in conanfile.py by @robomics in #132
• Prepare for release by @robomics in #135

Documentation

• Fix typos in the README by @robomics in #109
• Update the docs by @robomics in #124
• Update the Quickstart section to showcase PixelSelector.describe() by @robomics in #136

Various

• Remove dead code by @robomics in #117
• Improve tests by @robomics in #125

Full Changelog: v1.0.0...v1.1.0