2024/10/13-18:29:41 (Linux cray unknown)

pbenner · Oct 13, 2024 · 2600654 · 2600654
1 parent 4274857
commit 2600654
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Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/bam_test.go b/bam_test.go
@@ -18,7 +18,7 @@ package gonetics
 
 /* -------------------------------------------------------------------------- */
 
-import   "fmt"
+//import   "fmt"
 import   "testing"
 
 /* -------------------------------------------------------------------------- */

diff --git a/tools/bamToBigWig/bamToBigWig.go b/tools/bamToBigWig/bamToBigWig.go
@@ -456,7 +456,7 @@ func main() {
   }
 
   //////////////////////////////////////////////////////////////////////////////
-  result, fraglenTreatmentEstimate, fraglenControlEstimate, err := BamCoverage(filenameTrack, filenamesTreatment, filenamesControl, fraglenTreatment, fraglenControl, optionsList...)
+  result, fraglenTreatmentEstimate, fraglenControlEstimate, err := BamCoverage(filenamesTreatment, filenamesControl, fraglenTreatment, fraglenControl, optionsList...)
 
   // save fraglen estimates
   //////////////////////////////////////////////////////////////////////////////

diff --git a/track_coverage.go b/track_coverage.go
@@ -405,7 +405,7 @@ func estimateFraglen(config BamCoverageConfig, filename string, genome Genome) f
 
 /* -------------------------------------------------------------------------- */
 
-func bamCoverage(config BamCoverageConfig, filenameTrack string, filenamesTreatment, filenamesControl []string, fraglenTreatment, fraglenControl []int, genome Genome) (SimpleTrack, error) {
+func bamCoverage(config BamCoverageConfig, filenamesTreatment, filenamesControl []string, fraglenTreatment, fraglenControl []int, genome Genome) (SimpleTrack, error) {
 
   // treatment data
   track1 := AllocSimpleTrack("treatment", genome, config.BinSize)
@@ -553,7 +553,7 @@ func bamCoverage(config BamCoverageConfig, filenameTrack string, filenamesTreatm
 
 /* -------------------------------------------------------------------------- */
 
-func BamCoverage(filenameTrack string, filenamesTreatment, filenamesControl []string, fraglenTreatment, fraglenControl []int, options ...interface{}) (SimpleTrack, []fraglenEstimate, []fraglenEstimate, error) {
+func BamCoverage(filenamesTreatment, filenamesControl []string, fraglenTreatment, fraglenControl []int, options ...interface{}) (SimpleTrack, []fraglenEstimate, []fraglenEstimate, error) {
 
   config := BamCoverageDefaultConfig()
 
@@ -692,7 +692,7 @@ func BamCoverage(filenameTrack string, filenamesTreatment, filenamesControl []st
     }
   }
   //////////////////////////////////////////////////////////////////////////////
-  if result, err := bamCoverage(config, filenameTrack, filenamesTreatment, filenamesControl, fraglenTreatment, fraglenControl, genome); err != nil {
+  if result, err := bamCoverage(config, filenamesTreatment, filenamesControl, fraglenTreatment, fraglenControl, genome); err != nil {
     return SimpleTrack{}, treatmentFraglenEstimates, controlFraglenEstimates, err
   } else {
     return result, treatmentFraglenEstimates, controlFraglenEstimates, err