Metadata files from RNA-seq analyses from Bonté et al. can be found in this repository. Expression matrices of genes, individual TEs, and TE subfamilies can found here.
- Mouse.tumor.TILs.metadata.tsv
- Type of data : bulk RNA-seq data of sorted CD8+ TILs (model B16 melanoma tumors)
- Label of samples : Tumor Slamf6+ or Tumor Tim3+
- Origin of the data : B. C. Miller et al., Subsets of exhausted CD8+ T cells differentially mediate tumor control and respond to checkpoint blockade. Nature Immunology 20, 326-336 (2019).
- Mouse.LCMV.TILs.metadata.tsv
- Type of data : bulk RNA-seq data of sorted CD8+ TILs (model LCMV clone 13)
- Label of samples : LCMV Slamf6+ or LCMV Tim3+
- Origin of the data : B. C. Miller et al., Subsets of exhausted CD8+ T cells differentially mediate tumor control and respond to checkpoint blockade. Nature Immunology 20, 326-336 (2019).
- Mouse.LCMV_Fli1.TILs.metadata.tsv
- Type of data : bulk RNA-seq data of sorted CD8+ TILs (model LCMV clone 13)
- Label of samples : WT or Fli1KO
- Origin of the data : Z. Chen et al., In vivo CD8(+) T cell CRISPR screening reveals control by Fli1 in infection and cancer. Cell 184, 1262-1280 e1222 (2021).
- Human.TILs.metadata.tsv
- Type of data : bulk RNA-seq data of sorted CD8+ TILs (NSCLC tumor tissue )
- Label of samples : TEx or TPex
- Origin of the data : Bonté et al. (ongoing submission)