Merge v1a (1.0.0a0) into main #51
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- Rename amplicon_size to amplicon_length - Add license field - Add source_url field - Unpin linkml version - New repo structure for primer-schemes inside test/data - Make repository_url optional
Separate version field and new manifest format
Validates BED and amplicon tiling for one or more reference chromosomes. Rejects complex tiling and duplicate primer names. Verifies that reference chroms in primer.bed exist in reference.fasta and they have sane coordinates. Fixes bug in build-recursive and validate-recursive where schemes of different version would clobber one another Fixes primer and reference checksums for multi-chromosome refs.
Integrated sorting by amplicon name needed for ampliconstats compat
Moved schema into pkg dir (automatic distribution with flit) Lots of tidying Adds tests
reference.fasta from a multi-chrom scheme definition
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Expedited for Mpox