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@phac-nml

National Microbiology Laboratory

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  1. mob-suite mob-suite Public

    MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

    Python 115 31

  2. staramr staramr Public

    Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

    Python 115 26

  3. ecoli_serotyping ecoli_serotyping Public

    In silico prediction of E. coli serotype

    Python 48 10

  4. irida irida Public

    Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

    Java 40 31

  5. refseq_masher refseq_masher Public

    Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database

    Jupyter Notebook 39 4

  6. biohansel biohansel Public

    Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes

    Python 25 7

Repositories

Showing 10 of 138 repositories
  • irida-next Public

    IRIDA Next

    phac-nml/irida-next’s past year of commit activity
    Ruby 8 Apache-2.0 3 12 6 Updated Sep 11, 2024
  • ArborView Public

    A way to visualize beautiful phylogenetic trees alongside contextual data.

    phac-nml/ArborView’s past year of commit activity
    HTML 0 0 0 0 Updated Sep 11, 2024
  • gasnomenclature Public

    Nomenclature assignment pipeline

    phac-nml/gasnomenclature’s past year of commit activity
    Nextflow 0 MIT 0 0 1 Updated Sep 11, 2024
  • staramrnf Public

    nf-core StarAMR

    phac-nml/staramrnf’s past year of commit activity
    Nextflow 0 MIT 0 2 1 Updated Sep 11, 2024
  • phac-nml/gasclustering’s past year of commit activity
    Nextflow 0 MIT 0 2 0 Updated Sep 10, 2024
  • mikrokondo Public

    A simple pipeline for bacterial assembly and quality control

    phac-nml/mikrokondo’s past year of commit activity
    Nextflow 10 MIT 2 9 1 Updated Sep 10, 2024
  • pangonet Public

    Create and manipulate SARS-CoV-2 pango lineages in a phylogenetic network.

    phac-nml/pangonet’s past year of commit activity
    Python 0 Apache-2.0 0 2 0 Updated Sep 7, 2024
  • wade Public

    WGS Analysis and Detection of Molecular Markers (WADE)

    phac-nml/wade’s past year of commit activity
    R 5 Apache-2.0 2 1 0 Updated Sep 6, 2024
  • wade-data Public

    Data for WGS Analysis and Detection of Molecular Markers (WADE)

    phac-nml/wade-data’s past year of commit activity
    1 Apache-2.0 0 0 0 Updated Sep 6, 2024
  • sistr_cmd Public

    SISTR (Salmonella In Silico Typing Resource) command-line tool

    phac-nml/sistr_cmd’s past year of commit activity
    Python 24 Apache-2.0 9 11 (1 issue needs help) 0 Updated Sep 6, 2024