The spaceMarker package currently contains functions to find marker genes based on the spatial coordiantes for imaging-based spatial transcriptomics technologies including 10x Xenium, NanoString CosMx and Vizgen MERSCOPE.
We are currently in the process of submitting spaceMarker to Bioconductor.
To install spaceMarker from github, use the following commands:
library(devtools)
devtools::install_github("phipsonlab/spaceMarker")In order to view the vignette for spaceMarker use the following command:
browseVignettes("spaceMarker")